Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02171 ATGATGGATTCTTCTCCTCTTATCCCTCCACCACCCCACGCCGAGATCGACCTCGAAGCCGCTTCCGCCGAACAAATTCAATGCCGCATTTGTCTTGAATCTGATGGTAGGGATTTCATAGCTCCTTGCAAGTGCAAAGGTACATCAAAGTATGTACATCGAGAGTGTTTGGATCATTGGCGAGCGGTTAAGGAAGGGTTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCATATCATTTGCGCATTCATGGTGCTGCTGATAGAAGATGGCGTACTTTGAAATTTCGTTTTTTTGTAACCAGAGACATTTTGTTTATATTTCTAGCTGTACAGCTTGTTGTTGCTTCACTGGCTTATTTGGTTTATCGAATAGATGGTTATCAGCAGTATTGGCTTCGTCTGGTTTGGGGTTTTGATAGTGAGCTAAGCTTTTATTATATTTGTGGAGCGCTGCTGTTTTTTGTGTTTCTTGGCCTGTCTGGGTGCTTTGTTACTTGTTATGATCGAAGAGTTCGCAATGATTTGGCTCAGCCTTGTCGAGAAATATGTCTTTGTTGCTGTCAACCTGGAGTCTGTGCTGACTGTCATTTACCAGGTACTCTTTGTATATGGACAGATTGCACTGCGTGCTTTGAGAGTTGTGGAAGCATGGCAACTGAATGTAGTGGTTGCTTGGGAGGTGCTGGGGAAGCAGGGCTACCATTATTATTCATAATGGCTTTGATTTTTCTGGTGCTCTTTACTGTAATTGGGATATTTTACAGTGTATTGGTGGCTACAATGGTAGGACAACGGATATGGCAGCGTCATTATCACATACTTGCTAAAAGGATGCTTACAAAGGAGTATGTCGTTGAGGACATTGATGGAGAGATAACAGGGTCTGATTGGTCTCCTCCATCCCTCCCACCGGAGCATGTACAGCAGCTGAAAACATTGGGCCTCCTTTGA 954 0.4413 MMDSSPLIPPPPHAEIDLEAASAEQIQCRICLESDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRIHGAADRRWRTLKFRFFVTRDILFIFLAVQLVVASLAYLVYRIDGYQQYWLRLVWGFDSELSFYYICGALLFFVFLGLSGCFVTCYDRRVRNDLAQPCREICLCCCQPGVCADCHLPGTLCIWTDCTACFESCGSMATECSGCLGGAGEAGLPLLFIMALIFLVLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDIDGEITGSDWSPPSLPPEHVQQLKTLGLL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02171 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 88 IPR013083 -
Cca09g02171 317 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 4 317 - -
Cca09g02171 317 CDD RING_CH-C4HC3_MARCH 28 76 - -
Cca09g02171 317 PANTHER BNAA04G12620D PROTEIN 4 317 - -
Cca09g02171 317 Pfam RING-variant domain 28 75 IPR011016 GO:0008270
Cca09g02171 317 ProSiteProfiles Zinc finger RING-CH-type profile. 20 82 IPR011016 GO:0008270
Cca09g02171 317 SUPERFAMILY RING/U-box 23 80 - -
Cca09g02171 317 SMART ringv_2 27 76 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02171 Cca-Chr9 46843912 46848193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02171 2 317 C3H Transcription Factor Family AT2G22120 81.250 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02171 - - gmx:100791777 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02171 09 46843912 46848193 Cca01g00224 01 2309854 2315665 PCT