Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca09g02169 | ATGACGTCTGTGTGTGAGGTTTTGTATCAGCTGTATGCCAAGACAATAGTCCTGTTAACATACATGCTAATAGAACTTATCCTTATCATTCAGTACCTTATTCGACCAAACCCAATATCAACCACCCAATTCCTCAGTTTCATTGAAGAGAAGAACCCCACAATTCCTTTCACTACAAAACTCAAGGCAGATCACATAGACTGCAGAGTGTGCTTAGCAGAATTCCAGGAAGGTGAGAAAGTCAGGAACTTGAACTGCAGACACACTTTTCACAAGGATTGCTTGGATCAGTGGCTGCAGCAATACTGTGCCACATGCCCTCTTTGCAGAAACAAGGTTCTTCCAGATGATGTTGTGGCCAAATACAACATGCTTCAAGATCAGGTTGAAAGGAGCACAAGAGTGTAG | 408 | 0.4265 | MTSVCEVLYQLYAKTIVLLTYMLIELILIIQYLIRPNPISTTQFLSFIEEKNPTIPFTTKLKADHIDCRVCLAEFQEGEKVRNLNCRHTFHKDCLDQWLQQYCATCPLCRNKVLPDDVVAKYNMLQDQVERSTRV | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca09g02169 | 135 | CDD | mRING-H2-C3H2C2D_ZSWM2 | 68 | 110 | - | - | |
| Cca09g02169 | 135 | ProSiteProfiles | Zinc finger RING-type profile. | 68 | 110 | IPR001841 | - | |
| Cca09g02169 | 135 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 39 | 115 | IPR013083 | - | |
| Cca09g02169 | 135 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED | 1 | 130 | - | - | |
| Cca09g02169 | 135 | PANTHER | - | 1 | 130 | - | - | |
| Cca09g02169 | 135 | SUPERFAMILY | RING/U-box | 46 | 117 | - | - | |
| Cca09g02169 | 135 | SMART | ring_2 | 68 | 109 | IPR001841 | - | |
| Cca09g02169 | 135 | Pfam | Ring finger domain | 67 | 110 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca09g02169 | Cca-Chr9 | 46826053 | 46828131 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca09g02169 | 67 | 121 | C3H Transcription Factor Family | AT1G15100 | 58.182 | 3.66e-20 | 79.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca09g02169 | K16282 | - | gmx:102669811 | 221.861 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca09g02169 | 09 | 46826053 | 46828131 | Cca01g00221 | 01 | 2296642 | 2297136 | PCT |