Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02165 ATGGCCTCCACACTCGCTTGGAGACTCGCTTCCAACAATGGCACCACCCTTGCCGCAAATGATCTGGAAAGAAATGGTGATGGGAAGACTCAAGATTCAGAGCCCCCAACTCCACATTCTGTTCTAAAGATGGGATTGAGAGATCGTAACAGCAGCATGGAGGATCCAGATGGGACATTAGCTAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGGGTTCATCTTCTGTGCAGGAGAAAGAGTATTCTTTAAGGCAGTTATCGGAGCTTATAGATATGCGTGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAGGCCGTTCCAGTACTTGTTTCCCTTCTCCGGTCAGGTTCATTGAATGTGAAGATACAGGCAGCAACTGTCTTAGGCTCACTTTGTAAAGAAAATGAGCTAAGGGTGAAGGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTGGTCTATTGAAGTCCAGTTCTACTGAAGGGCAAATTTCTGCTGCAAAGACTATTTATGCTGTCTCTCAAGGTGGTGTAAAGGATCATGTTGGTTCAAAGATTTTTTCAACTGAAGGAGTTGTACCAGTGCTGTGGGAGCAGCTGAAAAGTGGGTTGAAGACAGGAAGTGTAGTTGAAGGTTTATTGACTGGTGCATTGAAAAATCTCTCCAGTAATACTGAGGGATTCTGGAATGCAACAATACGTGCTGGAGGAGTGGACATATTAGTGAAGTTATTGGCAACAGGACAGCCTAGCTCTTTAGCAAATGTGTGCAATTTACTCGCTTCTGTAATGATGGAGGATGCATCTGTTTGTTCAAAGGTGTTGACAGCGGAGGTGACAAAACAACTTCTGAAACTATTAGGCCCCGGTAATGATGACTCTGTTAGAGCTGAAGCAGCTGGTGCTATAAAATCTCTTTCTGCCCAGTGCAAAGAGGCAAGGCGAGAGATAGCCAATGCTAATGGTATTCCTGCTTTGATCAATGCTACCATAGCTCCTTCCAAAGAATTCATGCAGGGTGAGTGTGCTCAAGCATTACAGGAGAATGCTATGTGTGCTCTTGCAAACATCTCTGGAGGTTTGTCTTATGTCATATCTAGCCTTGGTCAAAGTCTTGAATCATGCACCTCACCTACCCAAATTGCTGACACATTAGGAGCTTTAGCATCAGCTCTCATGATATATGATGACAAGGCAGAATCTACCAGAGCATCAGATCCATTGGTTGTTGAGCAGACATTACTCAAACAATTTAAACCTCGTTTGCCCTTCCTTGTACAGGAACGGACCATTGAAGCTCTTGCTAGCTTGTATGGAAATTCCATACTTTCAAATAAACTTGCAAATTCTGATGCAAAACATCTGCTTGTTGGTTTAATAACAATGGCAGCCAATGAAGTGCAAGACGAGCTTGTAAAAGCTCTGTTGACTCTGTGCAAAAGTGAAGGTAGTCTATGGCGTGCACTTCAGGGCCGTGAAGGAGTTCAGCTTTTGATATCTCTTTTGGGGCTTTCATCAGAACAGCAGCAAGAGTGTGCAGTGGCCCTGCTTTGTCTTCTTTCATATGAAAATGATGAAAGTAAATGGGCAATTACTGCTGCTGGTGGCATACCTCCACTTGTTCAAATTTTGGAGACAGGATCTGCAAAAGCAAAGGAAGATTCAGCAACAATTCTTAAGAATCTCTGCAATCATAGTGAAGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCTTTGTTGTGGCTATTGAAGAATGGAAGCCCAAATGGTAAGGATATTGCAGCGAAGACTTTAAATCATTTAATTCATAAATCTGATACTACGACCATCAGCCAGCTTACAGCATTATTGACCAGTGATCTTCCTGATTCTAAGGTTTATGTTTTGGATGCTTTGAGAAGTATGCTTTCTGTTGCTCCCCTTAGTGACATTTTACGTGAAGGTAGTGCTGCCAGTGATGCATTTGATACCATGATAATATTATTGTCCTCTACCAAGGAAGAAACTCAGGCAAAGTCTGCATCAGCTCTGGCAGGAATTTTTGAATCAAGGAAAGACGTGCGTGAAAGTAGCATTGCTATTAAAACTCTTTGTTCAGCCATGAAATTGCTTAATGTTGAATCTGAAAGTATCCTGATTGAGTCCTCACACTGCCTGTCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTAGCTGCTGTTGCTAGAGACACATTATCCCCCTTAGTTGCACTAGCAAACTCTTCTGTTTTGGAAGTTGCAGAGATGGCAATATGTGCTCTGGCAAACCTTATTTTGGATAGTGAAATTGCAGAGAAAGCTATTGCAGAAGAAGTCATCTTACCTGCTACTAGAATATTATGTGAAGGCACAATTTCTGGAAAAACCCATGCTGCAGCAGCAATTGCTCGCCTCCTACATTCTCGGAATGTTGATCATGCTGTAACCGATTGTGTGAATCGTGCTGGAACTGTTCTCGCTTTAGTTTCTTTCTTAGATTCTGCTGTTAATGGATCTGTTGCCACATCGGAGGCTCTAGAAGCACTTGCCATCCTGTCCAGGTCAGAAGAGACCAGTGCAAATATTAAACCTGCTTGTGCAGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCAATAGTCTTGTGTATTGTTGATTCAGAGCCAATGTTGCAGGATAAAACTATTGAGATTTTATCTCGATTATGTAAGGATCAACCTGTTGTATTAGGAGATACTATTGTGTCAGCACCTGGATGTATATCTTCAATAGCTAAGAGGATAATTAGTTCCACAAATGTAGAGGTCAAAATTGGGGGAGCAGCACTTCTTATTTGTACTGCAAAAGCAAATCATCAGAGACTGGTGGAGGATCTCAATTCATCGAACTTGTGTGTTCATCTTATTCAGTCTCTTGTTGATATGCTTATTTCTGTGCAGCCTTCTTTGGGTTACCTGGATGATAACAAGAAGGAATTCATTAGCATATGCAGGCACACAAAAGAAGAGGTTGAAGGTTGTGAATCCAACACTAGCACCAACATTATATATGGTGCTGACTTGATGATATGGTTACTGTCCATTCTTGCTTGTCATGATGAAAAAAATAAAATTGCAATAATGGAGGCTGGAGCAATTGATGTTCTCATCGACAGGATCTCCAATTGTTTCTCTCAATATTCTCAGATTGACTACAAAGAAGATAGCAGCATGTGGATTCATGCTTTGTTGTTGGCAATATTATTTCAAAATAGAGATATCATACGGGCACATCCAGCCATGAAATCTGTACCAGCACTTACCAGTTTATTGAAGTCAGAGGAATCAGCAAACAAATATTTTGCTGCACAATCAATAGCTAGCCTTGTCTGTAATGGTAGCAGGGGAACACTTCTGTCTGTGGCGAATTCTGGGGCAGCAGGTGGACTTATCTCTTTGCTTGGCTGTGCTGATATTGATATACATGATCTTCTGGAATTGTCGGAGGAATTTTCTTTGGTGCGTTATCCTGATCAAGTGGCTCTTGAGAGGTTATTTAGAGTTGATGATATAAGAGTTGGAGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTGCTTAAACCAATTCCAGATCGCCCTGGGGCACCATTTTTGGCACTTGGGCTTTTGACTCAGCTCGGTAAAGATTGTCCATCGAATTTGAATGTAATGGTGGATTCTGGGGCCTTAGAAGCACTTACAAAGTATCTTTCACTGAGTCCACAAGATGCAACAGAAGAAGCTGCTACAGATCTGCTTGGAATTCTTTTTAGCAGTGCTGAAATACGAAAACATGAATCAGCATTTGGTGCTGTGACTCAACTTGTAGCTGTTCTACGTTTAGGAGGAAGAGGTGCAAGGTATAGTGCTTCAAAAGCCTTGGAAAGTTTATTTTCTGCAGACCACATTAGAAATGCAGAGGTTGCTCGACAGGCTGTTCAACCATTGGTGGAGATTCTCAGTACCGGTTCAGAAAGGGAACAACATGCTGCCATTGCTGCATTGGTTGGGTTGCTGAGTGAAAACCCATCAAGAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGAAGTTCTTTGTAGGATCCTTTCATCAAATTGTTCGATGGACCTGAAAGGGGATGCTGCTGAATTATGTTATGCTCTCTTTGGAAATACAAGGATTCGGTCCACAACAGCTGCTGCACGTTGTGTCGAACCACTTGTCTCCCTCCTTGTAACTGAGTTTAATCCTGCTCAACTTTCAGTTGTCCGGGCATTGGATAGGCTTGTTGATGACGAGCAACTGGCTGAATTAGTTGCTGCACATGGTGCAGTTGTTCCTCTTGTTGGCCTAATGTCTGGTAGGAACTTTTTACTTCATGAGGCGATTTCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGGCCTGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTAATTGAAAGCGTACTCGACATCTTACATGAAGCACCAGATTATCTATGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACCAATAATGCTAGCATAGCTAAAGGACCATCTGCTGCTAAAGTGATTGAACCCTTGTTTTTATTGTTAACAAGACAGGAATTTGGGCCTGATGGACAGCATAGTGCATTGCAGGTTTTGGTTAATATCCTAGAACATCCACAGTGTCGTGCTGACTATTCATTGACTTCTCGCCAAGTTATTGAACCACTTATCCCTTTGCTTGATTCTCCAATTTCAGCCGTGCAACAGTTGGCTGCTGAGCTTCTTTCACATCTACTTGTAGAAGAACGTGTCCAGAAGGATCCAGTGACACAGCAAGCGATTGGCCCCCTCATTCGAGTTCTTGGTTCTGGTATACACATATTGCAGCAGAGAGCTGTAAAAGCCCTAGTTAGTATTGCACTAACATGGCCAAATGAAATTGCTAAAGAGGGTGGTGTTGTTGAAATTTCCAAAGTGATATTGCAAGCTGACCCTTCCCTTCCTCATGCTTTATGGGAGTCTGCTGCCTCGGTTTTGTCAAGTATTCTGCAGTTTAGCTCTGAATTCTACTTGGAAGTGCCTATTGCTGTATTGGTAAGGTTACTTCGATCTGGCTCAGAGAGCACAGTTGTTGGTGCTTTAAATGCTCTTCTGGTGTTGGAAAATGATGATGGAACTAGTGCAGAAGCTATGGCTGAAAGTGGTGCTATAGAGGCTCTCTTGGAGCTCCTACGATCTCATCAGTGTGAGGAAACTGCCGCAAGACTCTTAGAAGTATTGCTGAACAATGTCAAGATTCGAGAAACGAAAGTAACAAAATCAGCTATTGTACCATTATCTCAGTACCTTTTGGACCCACAAACTCAAGCACAGCAGGCAAGGTTATTGGCAACTTTGGCTCTCGGGGATCTGTTTCAGAATGAGAGTCTTGCTCGAACAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGATCAACCAACAGAAGAAATGAAAGTTGTAGCTATATGTGCTCTGCAGAATCTTGTGATGTACAGTCGATCAAATAGAAGAGCAGTTGCAGAGGCTGGTGGTGTTCAGGTTGTACTGGATCTGATAGGTTCAAGTAATCCAGAAACATCAATTCAGGCTGCAATGTTTGTTAAACTTCTCTTCTCAAATAATACTATTCAAGAATATGCTTCTAGTGAAACTGTCAGAGCAATTACTGCCGCTATTGAAAAAGACTTATGGGCTTCTGGAACTGTGAATGAAGAATATCTGAAAGCCTTAAATTCTCTATTCAGCAACTTCCCAAGACTAAGAGCAACTGAACCAGCAACACTTAGCATTCCCCATCTGGTTACATCTTTAAAGACAGGTACAGAGGCTTGTCAAGAAGCTGCATTGGACGCACTTTTCCTGCTCAGACAAGCTTGGTCAGCATGTCCAGCTGAAGTTTCTAGAGCTCAGTCAATTGCAGCTGCAGATGCTATTCCATTGCTGCAGTATTTAATCCAGTCTGGCCCGCCTCGGTTCCAGGAAAAAGCAGAATTCTTATTGCAGTGTTTGCCAGGGACATTGGTGGTGATCATCAAGCGTGGTAACAATATGAAGCAGTCTGTTGGAAACCCAAGTGTTTACTGCAAGATTACACTTGGAAACACTCCACCAAGGCAGACCCAGGTGGTTTCAACTGGCCCAAATCCAGAGTGGGATGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCACATTTCTTGCAAAAATAAGAGCAAAGTGGGAAAGAGTAAATTTGGGAAAGTAACGATCCAGATTGATCGAGTGGTAATGCTTGGATCAGTAGCTGGAGAGTATGCTTTGTTGCCTCAAAGTAAAAGTGGCCCCCCACGGAATCTAGAAATAGAATTTCAGTGGTCTAACAAGTGA 6456 0.4264 MASTLAWRLASNNGTTLAANDLERNGDGKTQDSEPPTPHSVLKMGLRDRNSSMEDPDGTLASVAQCIEQLRQGSSSVQEKEYSLRQLSELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSTEGQISAAKTIYAVSQGGVKDHVGSKIFSTEGVVPVLWEQLKSGLKTGSVVEGLLTGALKNLSSNTEGFWNATIRAGGVDILVKLLATGQPSSLANVCNLLASVMMEDASVCSKVLTAEVTKQLLKLLGPGNDDSVRAEAAGAIKSLSAQCKEARREIANANGIPALINATIAPSKEFMQGECAQALQENAMCALANISGGLSYVISSLGQSLESCTSPTQIADTLGALASALMIYDDKAESTRASDPLVVEQTLLKQFKPRLPFLVQERTIEALASLYGNSILSNKLANSDAKHLLVGLITMAANEVQDELVKALLTLCKSEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSYENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTLNHLIHKSDTTTISQLTALLTSDLPDSKVYVLDALRSMLSVAPLSDILREGSAASDAFDTMIILLSSTKEETQAKSASALAGIFESRKDVRESSIAIKTLCSAMKLLNVESESILIESSHCLSAIFLSIKENRDVAAVARDTLSPLVALANSSVLEVAEMAICALANLILDSEIAEKAIAEEVILPATRILCEGTISGKTHAAAAIARLLHSRNVDHAVTDCVNRAGTVLALVSFLDSAVNGSVATSEALEALAILSRSEETSANIKPACAVLAEFPKSISPIVLCIVDSEPMLQDKTIEILSRLCKDQPVVLGDTIVSAPGCISSIAKRIISSTNVEVKIGGAALLICTAKANHQRLVEDLNSSNLCVHLIQSLVDMLISVQPSLGYLDDNKKEFISICRHTKEEVEGCESNTSTNIIYGADLMIWLLSILACHDEKNKIAIMEAGAIDVLIDRISNCFSQYSQIDYKEDSSMWIHALLLAILFQNRDIIRAHPAMKSVPALTSLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADIDIHDLLELSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLGKDCPSNLNVMVDSGALEALTKYLSLSPQDATEEAATDLLGILFSSAEIRKHESAFGAVTQLVAVLRLGGRGARYSASKALESLFSADHIRNAEVARQAVQPLVEILSTGSEREQHAAIAALVGLLSENPSRALAVADVEMNAVEVLCRILSSNCSMDLKGDAAELCYALFGNTRIRSTTAAARCVEPLVSLLVTEFNPAQLSVVRALDRLVDDEQLAELVAAHGAVVPLVGLMSGRNFLLHEAISRALVKLGKDRPACKMEMVKAGVIESVLDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVIEPLFLLLTRQEFGPDGQHSALQVLVNILEHPQCRADYSLTSRQVIEPLIPLLDSPISAVQQLAAELLSHLLVEERVQKDPVTQQAIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVVEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRSGSESTVVGALNALLVLENDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAIVPLSQYLLDPQTQAQQARLLATLALGDLFQNESLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNRRAVAEAGGVQVVLDLIGSSNPETSIQAAMFVKLLFSNNTIQEYASSETVRAITAAIEKDLWASGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGTEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKITLGNTPPRQTQVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGSVAGEYALLPQSKSGPPRNLEIEFQWSNK 2151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02165 2151 Coils Coil 297 324 - -
Cca09g02165 2151 Pfam Armadillo/beta-catenin-like repeat 525 564 IPR000225 GO:0005515
Cca09g02165 2151 Pfam Armadillo/beta-catenin-like repeat 104 134 IPR000225 GO:0005515
Cca09g02165 2151 SUPERFAMILY ARM repeat 64 264 IPR016024 -
Cca09g02165 2151 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
Cca09g02165 2151 Gene3D - 1796 2028 IPR011989 -
Cca09g02165 2151 SUPERFAMILY ARM repeat 1580 2028 IPR016024 -
Cca09g02165 2151 SUPERFAMILY ARM repeat 217 607 IPR016024 -
Cca09g02165 2151 SMART arm_5 1730 1769 IPR000225 GO:0005515
Cca09g02165 2151 SMART arm_5 1439 1479 IPR000225 GO:0005515
Cca09g02165 2151 SMART arm_5 1398 1438 IPR000225 GO:0005515
Cca09g02165 2151 SMART arm_5 1481 1521 IPR000225 GO:0005515
Cca09g02165 2151 SMART arm_5 733 771 IPR000225 GO:0005515
Cca09g02165 2151 SMART arm_5 567 607 IPR000225 GO:0005515
Cca09g02165 2151 SMART arm_5 311 360 IPR000225 GO:0005515
Cca09g02165 2151 SMART arm_5 1857 1897 IPR000225 GO:0005515
Cca09g02165 2151 SMART arm_5 268 309 IPR000225 GO:0005515
Cca09g02165 2151 SMART arm_5 1229 1270 IPR000225 GO:0005515
Cca09g02165 2151 SMART arm_5 817 859 IPR000225 GO:0005515
Cca09g02165 2151 SMART arm_5 136 176 IPR000225 GO:0005515
Cca09g02165 2151 SMART arm_5 525 565 IPR000225 GO:0005515
Cca09g02165 2151 SMART arm_5 1569 1607 IPR000225 GO:0005515
Cca09g02165 2151 SMART arm_5 94 135 IPR000225 GO:0005515
Cca09g02165 2151 SMART arm_5 482 523 IPR000225 GO:0005515
Cca09g02165 2151 SMART arm_5 1184 1227 IPR000225 GO:0005515
Cca09g02165 2151 SMART arm_5 1312 1352 IPR000225 GO:0005515
Cca09g02165 2151 MobiDBLite consensus disorder prediction 16 43 - -
Cca09g02165 2151 Gene3D - 1680 1795 IPR011989 -
Cca09g02165 2151 Pfam C2 domain 2030 2119 IPR000008 -
Cca09g02165 2151 SUPERFAMILY ARM repeat 1186 1418 IPR016024 -
Cca09g02165 2151 SUPERFAMILY ARM repeat 850 1157 IPR016024 -
Cca09g02165 2151 SUPERFAMILY ARM repeat 1408 1656 IPR016024 -
Cca09g02165 2151 SUPERFAMILY ARM repeat 616 944 IPR016024 -
Cca09g02165 2151 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2030 2133 IPR035892 -
Cca09g02165 2151 Gene3D - 875 1365 IPR011989 -
Cca09g02165 2151 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 19 2151 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Cca09g02165 2151 CDD C2 2032 2122 - -
Cca09g02165 2151 Gene3D C2 domain 2029 2151 IPR035892 -
Cca09g02165 2151 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 19 2151 - -
Cca09g02165 2151 ProSiteProfiles C2 domain profile. 2011 2128 IPR000008 -
Cca09g02165 2151 SMART C2_3c 2031 2127 IPR000008 -
Cca09g02165 2151 Gene3D - 48 408 IPR011989 -
Cca09g02165 2151 Gene3D - 409 653 IPR011989 -
Cca09g02165 2151 Gene3D - 1366 1669 IPR011989 -
Cca09g02165 2151 Gene3D - 654 867 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02165 Cca-Chr9 46783447 46794464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02165 496 620 U-box Gene Family AT3G46510 32.540 2.59e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02165 - - gmx:100794002 3876.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02165 09 46783447 46794464 Cca01g00213 01 2203841 2214188 PCT