Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02159 ATGCAGAGAAGAGAGTTCTCCCAAACACTTCAATCAAATATGGCTTCATCGATGGTAGTGGTGGACACTGAGAAGGTGCCTTCAGAACACTACGAAAGGTCTCAGTGGGTGCTCAATGCTCCTGATCCCCCCACTACGTGCCACAACTTGATGGCTTCTGTCACCAACACTATCTCACCTTACCAAAATATCTTTTCTTCTCAAAGACTTGTACTTTCCTTCTTGCGGGGCATTTTTCCTATTCTTCGTTGGGGTCAAAGTTACACACAAACCAAATTCAGGAACGATTTACTTGCAGGTCTAACCATTGCAAGTCTCTGCATTCCTCAGAGCATTGGGTATGCCACTTTAGCAAAGCTTGATCCTGAATATGGACTCTATACGAGTGTGGTGCCACCTCTTATATATGCTGTAATGGGAAGTTCAAGAGAAATAGCGATTGGACCGGTGGCTGTGGTATCGCTTCTTTTGTCATCAATGATTGAGAAGTTAATAGATCCTGGCATTGATCCAAATGGTTACAGAAAGCTTGTTTTCACTGCCACTTTCTTTGCTGGTGTATTTCAAGCTGCTTTTGGACTCTTCAGGTTGGGGTTCATTGTGGATTTTCTGTCTCATGCTGCTATTGTTGGATTCATGGCGGGAGCAGCTATAATAATTGGTCTTCAACAGCTGAAGGGACTATTTGGGATCAATCATTTTACCAACAAAACAGACATAATCTCTGTCATCAAATCCGTCTGGGAATCGGTTCATCATCCATGGAATCCTCGCAATTTTGTCCTGGGATGTTCATTCTTCATTTTCATCCTGTTTACCAGATTTCTGGGTAAAAGGAATAGGAAACTGTTCTGGTTGCCAGCAATATCCCCACTTGTATCAGTTATGATATCAACTCTTGTTGTTTTTCTGACACGATCTGACAAAAGTGGAGTTAACATAGTGAGACACATCAAAGGAGGACTCAATCCAATCTCTATCAATCAGATTGAGTTCAATAGCCCCCATATTGGAGCATTGGCCAAAATTGGACCAGTTCTTGCTGCTGTTGCACTCACTGAATCAGTTTCTGTTGGCCGATCTTTTGCATCCATGAAAGGATACCATCTTGATGGAAACAAGGAAATGGTGTCATTAGGCTTCATGAACATCATAGGATCCTTCACCTCTTGCTACGTTGCAACTGGTTCTTTCTCCCGCACGGTGGTTAATTTCAGTGCGGGTTGTGAAACATTAGCGTCAAACATTGTGATGGCCATAGTGGTGATGATATCACTACAATGTTTGACGAAATTACTGTACTTTACCCCAACTGCTATTCTGGCTTCAATAATCCTTTCAGCACTCCCGGGACTCATAGACATCAATGAAGCTTACAGAATATGGAAAGTTGATAAGCTTGATTTCCTTGCTTGCATTGGAGCCTTCTTCGGGGTTCTCTTTGCGTCAGTGGAAATTGGTCTGCTAGTGGCAGTGACAATATCTTTGACAAAGATAATTTGGATCTCAATTGGAGCAGGCACAGAAACTTTGGGAAGACTACCCGGCACAGATGTGTTCTGCAATGTACAACAGTATCCTATGGCTGTTAAGACTCCTGGAGTTGCAATAATACGCGTAAAGTCTGCATTGCTTTGCTTTTCTAACGCCAATTCAGTCAGAGAAAGGATCCTGAAGTGGATCACTAGGGAAGAGGCAGAGAGGAACACGGAAGGCAACATCAGTAGCATAATTCAGCTCGTAATCCTTGACACCTCCAATTTGGTGAGCATCGACACCTCAGGAATTGCTTCTCTAGAGCAACTAAATAAGAGTTTGGTCTCAAATGGGAAACAGCTAGCAATTGCCAATCCAAGTTGGCAAGTGATTTACAAGCTGAAGGCGACCAACTTTGTGACAAGAATTGGAGGAAGGGTCTTCTTGACTATTGGAGAAGCTATTGACTGCAAGCTGGATTTCTAA 1962 0.4286 MQRREFSQTLQSNMASSMVVVDTEKVPSEHYERSQWVLNAPDPPTTCHNLMASVTNTISPYQNIFSSQRLVLSFLRGIFPILRWGQSYTQTKFRNDLLAGLTIASLCIPQSIGYATLAKLDPEYGLYTSVVPPLIYAVMGSSREIAIGPVAVVSLLLSSMIEKLIDPGIDPNGYRKLVFTATFFAGVFQAAFGLFRLGFIVDFLSHAAIVGFMAGAAIIIGLQQLKGLFGINHFTNKTDIISVIKSVWESVHHPWNPRNFVLGCSFFIFILFTRFLGKRNRKLFWLPAISPLVSVMISTLVVFLTRSDKSGVNIVRHIKGGLNPISINQIEFNSPHIGALAKIGPVLAAVALTESVSVGRSFASMKGYHLDGNKEMVSLGFMNIIGSFTSCYVATGSFSRTVVNFSAGCETLASNIVMAIVVMISLQCLTKLLYFTPTAILASIILSALPGLIDINEAYRIWKVDKLDFLACIGAFFGVLFASVEIGLLVAVTISLTKIIWISIGAGTETLGRLPGTDVFCNVQQYPMAVKTPGVAIIRVKSALLCFSNANSVRERILKWITREEAERNTEGNISSIIQLVILDTSNLVSIDTSGIASLEQLNKSLVSNGKQLAIANPSWQVIYKLKATNFVTRIGGRVFLTIGEAIDCKLDF 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02159 653 ProSiteProfiles STAS domain profile. 545 650 IPR002645 -
Cca09g02159 653 ProSitePatterns SLC26A transporters signature. 122 143 IPR018045 GO:0008271|GO:0008272
Cca09g02159 653 TIGRFAM sulP: sulfate permease 80 639 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cca09g02159 653 Pfam Sulfate permease family 93 473 IPR011547 GO:0016021
Cca09g02159 653 PANTHER SULFATE TRANSPORTER 24 649 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cca09g02159 653 Pfam STAS domain 526 646 IPR002645 -
Cca09g02159 653 Gene3D STAS domain 507 650 IPR036513 -
Cca09g02159 653 SUPERFAMILY SpoIIaa-like 530 648 IPR036513 -
Cca09g02159 653 PANTHER LOW AFFINITY SULFATE TRANSPORTER 3-LIKE 24 649 - -
Cca09g02159 653 CDD STAS_SulP_like_sulfate_transporter 526 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02159 Cca-Chr9 46732186 46739306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02159 8 648 Inorganic Solute Cotransporters AT5G10180 64.760 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02159 K17469 - gmx:100775538 1117.06