LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g02152	ATGTGCATTAATAGTACCCTCCAACACAACCTCGCATGGCCAACACGCGGCACTCACAGCACTCACAGTTCCATTTCCTCAGCACGACCAAAACACCTTTTTCTCATACCGACTTTTGAAGAAGCAAGGAGGAATATATTCACAGAAATCATGGTGGAGATTCACGAAGAAATCAACCCCTTCgatgaagaagaaaatgaagaggaagaaATCGACTACGACCAGCTTAAGAAGCGCATGTGGAAGGATCGGATCCTGCTGCAGAAGCTAAAGGGAAAACGCCCCAAAGAAGAGCCAGACCAAGAAGCAAAACAAGAAGCATCTAGGCGGAAGAAGATGTCAAGAGCACAAGATTCAATCCTCAAGTACATGGTGAAGATAATGGAAGTTTGCAATGCTCAAGGTTTTGTGTATGGAATTGTCCCCGAGAAGGGTAAGCCAGTGACCGGTTCTTCTGACAGCTTGCtcatcaaacacatgtctcctgatgtggacaaacttaaaaggttggtgactcagtccaagactttgcaagataagatgacagccaaggacacagcaacttggtccaaggttatgaaccaagaagaagcTTTGCTACAACTTACCAATAAGTGCCTCAAGATATCTCCATCTGATGAAGATGAGAGCGAGCGTGAAAGCTCTACTGGTACTTCACATGAAGGGAGTTGTGTAGTTGAGTTGAATGATGGCCCCAATTTAGGCGGCAGCAATGAGAAAAGGAAGAGTGTGTTTGACTTAGATGCCGCTTTTGATAAGCTATATGCTTGTCAATACTCTCAGTGTCCACAAAGTGAATTGGATATGGGATTTCCTGACAAAAACTCAAGGATGAACCATGAATCCCTTTGTGCTTACCGCAATAACCAAAGTCCTTTTCTCCTTCATGATCATCCTAACAATGAAACACAACTTCCAAGTGTGGACGATTGGATGAACATGGTAGCAAGAGGTAATCAGAATGAGAACAACATTGTTGGGTATCTGAATGATCAGTTGAGAGAGATTGCAGGAAAGACACCCGAAGATTATGGAGGCTTATGGCTAAATGCCCTTGAAGATCTCGAGTTTCAAGCTGCACTGGATCAGATGGAAATAGACTTGAATCATAATCATGAGCAAGATACCCTACAAGGCCAAGAACTAACCTCAATTTGGGACTTAACTTACAAATAA	1197	0.3776	MCINSTLQHNLAWPTRGTHSTHSSISSARPKHLFLIPTFEEARRNIFTEIMVEIHEEINPFDEEENEEEEIDYDQLKKRMWKDRILLQKLKGKRPKEEPDQEAKQEASRRKKMSRAQDSILKYMVKIMEVCNAQGFVYGIVPEKGKPVTGSSDSLLIKHMSPDVDKLKRLVTQSKTLQDKMTAKDTATWSKVMNQEEALLQLTNKCLKISPSDEDESERESSTGTSHEGSCVVELNDGPNLGGSNEKRKSVFDLDAAFDKLYACQYSQCPQSELDMGFPDKNSRMNHESLCAYRNNQSPFLLHDHPNNETQLPSVDDWMNMVARGNQNENNIVGYLNDQLREIAGKTPEDYGGLWLNALEDLEFQAALDQMEIDLNHNHEQDTLQGQELTSIWDLTYK	398

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca09g02152	398	PANTHER	ETHYLENE INSENSITIVE PROTEIN	52	155	-	-
Cca09g02152	398	PANTHER	ETHYLENE INSENSITIVE PROTEIN	156	397	-	-
Cca09g02152	398	MobiDBLite	consensus disorder prediction	209	246	-	-
Cca09g02152	398	PANTHER	ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN	156	397	IPR006957	GO:0005634
Cca09g02152	398	SUPERFAMILY	DNA-binding domain of EIN3-like	155	200	IPR023278	GO:0003700\|GO:0005634
Cca09g02152	398	Gene3D	-	155	206	IPR023278	GO:0003700\|GO:0005634
Cca09g02152	398	Gene3D	-	102	154	IPR023278	GO:0003700\|GO:0005634
Cca09g02152	398	PANTHER	ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN	52	155	IPR006957	GO:0005634
Cca09g02152	398	MobiDBLite	consensus disorder prediction	209	223	-	-
Cca09g02152	398	Pfam	Ethylene insensitive 3	75	155	IPR006957	GO:0005634

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g02152	Cca-Chr9	46656777	46658660	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g02152	154	325	EIL Transcription Factor Family	AT5G10120	41.111	6.32e-28	112

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	EIL	Cca09g02152		EIN3	1.1e-31	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g02152	K14514		-	gmx:100800288	290.812

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