Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02147 ATGGGAGCGGATAGTGGAGAGCTGATGAAAGCGCTTAAGCCTTTTATGAAAACTCATTATCTGTCTTCCGCATCTCCCTCATCATTATCACTGTCAGTGTCACAATCTCTCCCCAACCAACTCAGCCCACACCAAATACGTCAGATTcagcagcagcagcagcaACCCACAAGACTCGTGGGCCCAAAGCGCGTCCCCATGAAACACACAGCCACAGCGAAGCTCTACCGCGGGGTGCGACAGCGGCATTGGGGGAAGTGGGTGGCCGAGATCAGACTCCCGAAGAACCGCACGCGCCTCTGGCTGGGAACCTTCGACACCGCAGAGGAAGCAGCCTTGGCATACGACAACGCAGCGTTTAAGCTCAGGGGCGACTTGGCACGCCTCAATTTCCCTCATTTACGACACAACGGACCCTTGGTTCTCGGCGACTTCGGCGATTACAAGCCCCTCCCTTCCTCCGTCCACTCCAAGCTCCAAGCTATTTGCGAAGCCTTGCCCCTTTCCCTTTCCCACAAACCACAGCCCAAGCCCTCTGTCCAAGACGTCAAGCCCGTCATACGCGCTGCTCAGCTCCCACTGTTGGAGGATTTTAAGGTCAACCCCATGCTGTCTGCCGAATCTTCTTCTTCGCCTGAATCCGGTGTTTCTTTCTTGAATTTCTCCGATTCTAGTGAGTGGGATGAAATACACAACTTTGGGTTGGAGAAGTACCCTTCCGTGGAGATTGATTGGGCGGCTATATAA 747 0.5261 MGADSGELMKALKPFMKTHYLSSASPSSLSLSVSQSLPNQLSPHQIRQIQQQQQQPTRLVGPKRVPMKHTATAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGDLARLNFPHLRHNGPLVLGDFGDYKPLPSSVHSKLQAICEALPLSLSHKPQPKPSVQDVKPVIRAAQLPLLEDFKVNPMLSAESSSSPESGVSFLNFSDSSEWDEIHNFGLEKYPSVEIDWAAI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02147 248 Gene3D AP2/ERF domain 75 133 IPR036955 GO:0003700|GO:0006355
Cca09g02147 248 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 38 248 - -
Cca09g02147 248 MobiDBLite consensus disorder prediction 32 64 - -
Cca09g02147 248 MobiDBLite consensus disorder prediction 32 59 - -
Cca09g02147 248 SUPERFAMILY DNA-binding domain 75 133 IPR016177 GO:0003677
Cca09g02147 248 CDD AP2 74 134 IPR001471 GO:0003700|GO:0006355
Cca09g02147 248 Pfam AP2 domain 76 124 IPR001471 GO:0003700|GO:0006355
Cca09g02147 248 SMART rav1_2 75 138 IPR001471 GO:0003700|GO:0006355
Cca09g02147 248 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 38 248 - -
Cca09g02147 248 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Cca09g02147 248 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Cca09g02147 248 ProSiteProfiles AP2/ERF domain profile. 75 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02147 Cca-Chr9 46615477 46616887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02147 7 248 AP2-EREBP Transcription Factor Family AT4G39780 51.351 1.84e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca09g02147 AP2 3.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02147 K09286 - gmx:100818839 282.722