Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02126 ATGGCCGAAACCAGACACTACGTTCTCCCCTCTCAATTGGATATTGAGCAAATTATATCAGAAGCACAGCATCGATGGTTACGTCCGGCTGAAATTTGTGAAATTCTCAGCAATCATAAGAAGTTTCAAATTGCTCCAGAACCTGCTCATATGCCATCAAGTGGTTCACTATTCTTATTTGATCGGAAGGTGCTGAGATATTTCAGAAAGGATGGCCATAACTGGAGGAAGAAAAAAGATGGAAAAACAGTGAGAGAAGCTCATGAGAGACTAAAGGCTGGAAGTGTGGATGTGTTGCACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAAAGGCGCACGTATTGGATGCTTGAAGAAGATCTCTCTCACATTGTGCTTGTGCATTATCGACAAGTGAAGGGAACCAAGGCAAATTCTACATGTGCTAAAGAAAATGAAGAATCTCTTCCTTATGCTCAACAAACTGACAAAATTATGCCCAAAACAGAGGTGGACACTTCTTTATCATCTACTCTTCGTCCCCATAGTTACCAGGTTCCTTCACAAACTATAGATACAAGCATGAACAGTTCCCAAGCATCGGAATATGAAGAAGCCGAGTCCGCATTCAATAACCATGCAAGTTCTGATTTCTATCCTTTCCTCAAATTACAACTTCCTGTTGAGAAGATTAAAGCTCAACCTGCTGATTCTTATTGTCCTAGGCCACTCATAGATGATCAAGAGAAGTTGCCTGTCATTCCTGGGGTGAATTATATTTCACTCACTCAAGGCAATAAAATGAAAGACATTCATAATTTTGGATTGACATATGAATCCTCAAAACCCTTTGGCTTATCCTCATGGGAAGGTATCTTAGAAAATAACGCTGAAAGTCAACATGTGCCTTTTCAGCCTTTATTTCCTGAAACGCAACCTGATAACATGGGATTCAATAGCAATTTTTCTCAAGGAGATGAGATAATGGTGCCACATCTGACCACCAGCATTACTGAGCAGCATGAGAATGGAAGTCTCATACAAGCTGAAGGAAATTGGCAGGCTTATGGTGTTGATTCTTTACGCATGTCCAGTTGGCCTATAGATAGTGTGTATTCAGGCTCAACATGTGAGGTTAGTTGTAGCAACTGTGACAAGGAAGTTGATTTTCAAAATTCCTTGGAACAGTGTCTTCTACATCCACACCAACAAAATAAGGTTCTCGTGCAAAGTGATCCTCAAGAAAAACTTTTGAATACAAAAGGCAAGCTAACATCAGATTTGGAGGGCAATAGAAACCCTGATGGAATGGAAGACACGTATTTCACTTTTAAGGATGGACCTCCGGCAGAAGAGGGTCTGAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAACTTGGAGATGTGGAAGAATCAAATAAGCAATCCACTTCTAATGCTTATTGGGATACAGTTGAAAGCGAAAATGAGGTTGGCAGCACAACTATTCCTTCTCAAGGGCACCTGGACAACTTTGTACTGGATCCATCTATTTCCCATGATCAGCTCTTTAGCATTATTGACTATTCCCCAAGCTGGGCATTTGAGGAATCAGAAGTTAAGGTTATCATTTCTGGACGATTCTTAAGAAGTCAACATGAAGCAGAACAATGTAAATGGTCATGCATGTTTGGTGAGGTGGAAGTGCCAGCAGAGATCATTGCAAATGGTGTTCTCTGTTGTCTTACTCCGCCACACAAGGCTGGGAGGGTACCTTTCTATGTAACTTGTTCCAATAGGTTATCATGTAGTGAGGTGCGAGAATTTGATTTCCAAGTCAACTATACTCAAGAAGCCAACACTGAAGGTGAGAATAGAGGCAGCACTTTTGATACTTTTAGTATCCGATTTGGAGAAATGTTGTCCCTGGGGCATGCCTTTCCTCAGAATTCAGATTCAATCAGTGCAAGTGAGAAATTTCCACTGATAAGTAAAATCAGTTCTTTGCTGAGGGGAGATGATGATGATTGGGACAAGCTACTGAAACTTACTCTAGAGAAGGATTTTTCTCCAGAAAATTTACAGGAGCAGCTGCTTGAAAATCTTCTGAAAGATAAGTTACATGCATGGCTCATTCAGAAAATAACTGAAGATGGGAAAGGCCCTAATGTATTAGATGAAGGTGGCCAAGGTGTGCTTCATTTTGCGGCTGCTCTTGGCTATGATTGGGCCCTAGAACCCACAATAGTTGCTGGTGTGAATGTGAACTTTCGTGATGTAAATGGATGGACTGCTCTTCACTGGGCAGCATTTTGTGGCAGGGAGCGTACGGTTGCTTTTCTCATCTCTCTCGGTGCAGCACCTGGTGCACTGACTGATCCATGTCCAGAACATCCTTCTGGTAGAACACCGGCTGACTTGGCTTCTGCAAATGGACACAAAGGAATTGCAGGGTATCTTGCAGAATCTTCACTAAGTGCACACCTCACAACTCTTGATTTGAACAGGGATGTGGGAGAAAATTCGGGAGCAAAAGTAGTCCAAAGACTCCAAAACACTGCTCAAGTACATGATCTTGATGGTCCATCATATGAACTGTCATTGAAAGATTCACTGGCTGCAGTGTGTAACGCCACCCAAGCTGCTGCCCGTATTCATCAAGTTTTCAGAATGCAATCATTCCAGAGAAAACAACAAAAGGAATATGGTGATGACAAATTTGGAATATCTGATGAACGTGCTCTATCACTTGTAACAGTGAATGTAAAATCACACAAGTCTGGACCACGCGATGAGCCTGTCCATGCTGCTGCAATACGAATCCAGAACAAATTCCGTAGTTGGAAGGGAAGAAGAGAATTTTTGATGATTCGCCAACGAATAGTAAAAATTCAGGCTCACGTGAGAGGTCACCAGGTTAGGAAAAGTTGTGGGAAGATAATATGGTCCGTTGGAATCTTGGAGAAGGTTATTTTACGTTGGCGTCGAAAAGGTAGTGGTTTGCGTGGATTTAAATCAGAGGCCATTTCTGAGGGAACTATGATACAAGATGCGTCTTCCACAGAGGATGACTTTGATTTCTTAAAAGAAGGCAGGAAGCAAACAGAGCATAGGTTGCAGAAAGCCCTAGCCAGGGTGAAGTCAATGGTTCAGTATCCAGAGGCAAGAGACCAATACCATAGACTGTTGAATGTTGTAACTGAGATCCAAGAAAATCAGGTAAAGCATGAGAGCAGTTCTATGAGTTCAGAAGAACCGAGAGATTTCAGTAACCTCAATGATCTTGAAGCATTGTTGGACGATGATATTTTCATGCCTACAGCAACTTAG 3303 0.4181 MAETRHYVLPSQLDIEQIISEAQHRWLRPAEICEILSNHKKFQIAPEPAHMPSSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENENFQRRTYWMLEEDLSHIVLVHYRQVKGTKANSTCAKENEESLPYAQQTDKIMPKTEVDTSLSSTLRPHSYQVPSQTIDTSMNSSQASEYEEAESAFNNHASSDFYPFLKLQLPVEKIKAQPADSYCPRPLIDDQEKLPVIPGVNYISLTQGNKMKDIHNFGLTYESSKPFGLSSWEGILENNAESQHVPFQPLFPETQPDNMGFNSNFSQGDEIMVPHLTTSITEQHENGSLIQAEGNWQAYGVDSLRMSSWPIDSVYSGSTCEVSCSNCDKEVDFQNSLEQCLLHPHQQNKVLVQSDPQEKLLNTKGKLTSDLEGNRNPDGMEDTYFTFKDGPPAEEGLKKLDSFNQWMSKELGDVEESNKQSTSNAYWDTVESENEVGSTTIPSQGHLDNFVLDPSISHDQLFSIIDYSPSWAFEESEVKVIISGRFLRSQHEAEQCKWSCMFGEVEVPAEIIANGVLCCLTPPHKAGRVPFYVTCSNRLSCSEVREFDFQVNYTQEANTEGENRGSTFDTFSIRFGEMLSLGHAFPQNSDSISASEKFPLISKISSLLRGDDDDWDKLLKLTLEKDFSPENLQEQLLENLLKDKLHAWLIQKITEDGKGPNVLDEGGQGVLHFAAALGYDWALEPTIVAGVNVNFRDVNGWTALHWAAFCGRERTVAFLISLGAAPGALTDPCPEHPSGRTPADLASANGHKGIAGYLAESSLSAHLTTLDLNRDVGENSGAKVVQRLQNTAQVHDLDGPSYELSLKDSLAAVCNATQAAARIHQVFRMQSFQRKQQKEYGDDKFGISDERALSLVTVNVKSHKSGPRDEPVHAAAIRIQNKFRSWKGRREFLMIRQRIVKIQAHVRGHQVRKSCGKIIWSVGILEKVILRWRRKGSGLRGFKSEAISEGTMIQDASSTEDDFDFLKEGRKQTEHRLQKALARVKSMVQYPEARDQYHRLLNVVTEIQENQVKHESSSMSSEEPRDFSNLNDLEALLDDDIFMPTAT 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02126 1100 Gene3D - 677 841 IPR036770 -
Cca09g02126 1100 SUPERFAMILY E set domains 517 602 IPR014756 -
Cca09g02126 1100 Pfam IPT/TIG domain 517 593 IPR002909 -
Cca09g02126 1100 Gene3D - 923 971 - -
Cca09g02126 1100 SMART iq_5 947 969 IPR000048 GO:0005515
Cca09g02126 1100 SMART iq_5 924 946 IPR000048 GO:0005515
Cca09g02126 1100 ProSiteProfiles IQ motif profile. 926 954 IPR000048 GO:0005515
Cca09g02126 1100 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1064 - -
Cca09g02126 1100 SUPERFAMILY Ankyrin repeat 697 813 IPR036770 -
Cca09g02126 1100 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 2 1 1064 - -
Cca09g02126 1100 ProSiteProfiles IQ motif profile. 948 972 IPR000048 GO:0005515
Cca09g02126 1100 SMART CG_1_2 18 136 IPR005559 GO:0003677
Cca09g02126 1100 Pfam IQ calmodulin-binding motif 926 945 IPR000048 GO:0005515
Cca09g02126 1100 Pfam IQ calmodulin-binding motif 950 967 IPR000048 GO:0005515
Cca09g02126 1100 ProSiteProfiles Ankyrin repeat region circular profile. 752 777 - -
Cca09g02126 1100 SMART ANK_2a 791 820 IPR002110 GO:0005515
Cca09g02126 1100 SMART ANK_2a 752 781 IPR002110 GO:0005515
Cca09g02126 1100 Gene3D Immunoglobulins 510 606 IPR013783 -
Cca09g02126 1100 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Cca09g02126 1100 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cca09g02126 1100 ProSiteProfiles Ankyrin repeat profile. 752 784 IPR002110 GO:0005515
Cca09g02126 1100 Pfam Ankyrin repeats (3 copies) 724 820 IPR002110 GO:0005515
Cca09g02126 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 921 974 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02126 Cca-Chr9 46338081 46345266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02126 59 1100 CAMTA Transcription Factor Family AT2G22300 48.561 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Cca09g02126 Ank_2 3.7e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02126 K21596 - gmx:100798875 1922.13