Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02122 ATGCCAAAGGCAAACAAGAACAGCATCGAGTCATCCCTTCATGTTTCCCTTCGCAACCTCTCCCAACTCAGCACCCGAATCGATTCCCTTCAAACCTTCCTCTTCCAATCCATCCAATCCCGCACCCTCCTCACCCACCACCAAATCACCACAGTCTCCAACGAAATCCTCACCGCCATTCGCCACCTCATCACCAACGCCGCCGCCCTCACCGCCGCCGCCTCTCAAAACCTTCTCCCCCCAACCTCAGACTCTCCGAAACacaacaacaacaacaacaacaacaacaacaacaacaTGGACAACGACGAAACCCTTGTCGTGGAGCTGGACGCGGTGGAGCTTCTCGCCAAGCACCTCCACTTCTGCGAGGTGTGCGGGAAGGGCTTCACGCGCGACGCCAACCTCCGCATGCACATGCGCGCGCACGGCGACGAGTTCAAGACGGCGGAAGCGTTGGCGAACGGGGCGCGTGGGGCGACGCGGTTCTCGTGCCCGTTCGAGGGGTGCAACAGGAACAGGAAGCACAAGAAGTTCAGGGCGCTGAAGTCGGTGTTCTGCCTGAGGAACCACTTCAAGAGGAGGCACTGCCCGAAGACGCTGCGGTGCGAGCGGTGCCTGAAGAAGAGCTTCGCGGTGGTCTCCGACCTGAGGAGCCACGCCAAGCAGTGCCGCGGAGAGGCCACGTGGAAGTGCTCGTGCGGAACCACGTTTTCCAGGAAGGACAAGTTGTTCGGACACGTGGCGCTGTTCGAGGGGCACGTGCCGATGCTTGAGCAGGAGAAGGCCAAGGAAAGCGATGAGGGCTTGCCCGAAGGGGATACTGCAGGGCAAGAAAGATTTAGAAGTCTCATTCCAAGCTACATAAGAGATTCTTCTGTTGCAGTTATTGTATATGATGTTGCTAACAGGCAATCATTTCTGAACACTAACAAGTGGGTTGAGGAGGTTCGTACAGAACGTGGCAGTGATGTTATTATTGTCTTGGTTGGAAACAAAACTGATCTTGTTGATAAAAGGCAAGTTTCTATAGAGGAAGGAGATGCAAAGTCCCGTGAGTTCGGAATCATGTTTATAGAAACCAGTGCAAAAGCAGGCTTCAACATCAAGCCTTTGTTTCGTAAGATTGCTGCTGCCTTGCCAGGGATGGAAACTCTTTCTTCTACAAAGCAGGAAGACATGGTCGATGTAAATTTAAAACCCACGGTGAATTCATCCCAGACAGAGCAGCAAGGAGGAGGTTGCTCGTGCTAG 1254 0.5279 MPKANKNSIESSLHVSLRNLSQLSTRIDSLQTFLFQSIQSRTLLTHHQITTVSNEILTAIRHLITNAAALTAAASQNLLPPTSDSPKHNNNNNNNNNNNMDNDETLVVELDAVELLAKHLHFCEVCGKGFTRDANLRMHMRAHGDEFKTAEALANGARGATRFSCPFEGCNRNRKHKKFRALKSVFCLRNHFKRRHCPKTLRCERCLKKSFAVVSDLRSHAKQCRGEATWKCSCGTTFSRKDKLFGHVALFEGHVPMLEQEKAKESDEGLPEGDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTNKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGDAKSREFGIMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCSC 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02122 417 PRINTS Transforming protein P21 ras signature 261 283 - -
Cca09g02122 417 PRINTS Transforming protein P21 ras signature 323 336 - -
Cca09g02122 417 PRINTS Transforming protein P21 ras signature 358 380 - -
Cca09g02122 417 ProSiteProfiles small GTPase Rab1 family profile. 171 417 - -
Cca09g02122 417 SMART rab_sub_5 245 383 - -
Cca09g02122 417 TIGRFAM small_GTP: small GTP-binding protein domain 274 376 IPR005225 GO:0005525
Cca09g02122 417 Pfam Zinc-finger of C2H2 type 122 141 - -
Cca09g02122 417 Gene3D Classic Zinc Finger 121 150 - -
Cca09g02122 417 SMART ras_sub_4 239 383 - -
Cca09g02122 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 392 IPR027417 -
Cca09g02122 417 SMART rho_sub_3 251 382 IPR001806 GO:0003924|GO:0005525
Cca09g02122 417 PANTHER OSJNBA0019G23.4 PROTEIN 11 272 - -
Cca09g02122 417 ProSiteProfiles small GTPase Ras family profile. 215 417 IPR001806 GO:0003924|GO:0005525
Cca09g02122 417 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
Cca09g02122 417 SMART c2h2final6 163 196 IPR013087 -
Cca09g02122 417 SMART c2h2final6 121 143 IPR013087 -
Cca09g02122 417 Gene3D - 272 413 IPR027417 -
Cca09g02122 417 MobiDBLite consensus disorder prediction 77 102 - -
Cca09g02122 417 Pfam Ras family 274 379 IPR001806 GO:0003924|GO:0005525
Cca09g02122 417 SUPERFAMILY beta-beta-alpha zinc fingers 119 146 IPR036236 -
Cca09g02122 417 CDD Rab6 274 380 - -
Cca09g02122 417 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 272 - -
Cca09g02122 417 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02122 Cca-Chr9 46291320 46296267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02122 107 266 C2H2 Transcription Factor Family AT1G34370 55.621 3.02e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca09g02122 Ras 4.8e-33 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02122 - - ccaj:109813519 526.554