Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02120 ATGTCAGTAGAAATGGACTACATATTTGTGCTTTTGCTATTGGGTTGCTTATGTTCTTCTGTGTTGCCTGATACGCAAGGAGATGCACTATATGCATTGAAGCTATCTTTGAATGCTTCAGTTCACCAGCTTAATGACTGGAACCAAAATCAAGTGAATCCTTGTACTTGGTCACGTGTTTACTGTGATGCAAACAACAATGTTATGCAAGTATCACTAGCGTATATGGGATTCACAGGATACTTGACCCCAAGAATAGGAGTTCTAAAATATCTTAATGCTCTTTCTTTACAAGGGAATGGCATCGCTGGCAACATACCAAAAGAGTTAGGAAACCTGACAAACTTGGTCAGGTTGGATTTGGAAAACAACAAATTAACTGGAGAAATTCCTTCTTCCCTTGGGAATCTTAAGAAGCTGCAATTCTTGACATTGAGCCAAAACAATCTCAGGGGGACCATTCCAGAATCACTTGCCAGTCTTCCATTCTTGATCAATGTTTTGCTAGATTCAAATGATTTGAGTGGCCAAATCCCAGAGCAGTTATTTAAAGTTCCTAAATACAATTTCACTGGAAATAATTTGAACTGTGGTGCCAGCTACCATCAACTTTGCGAATCTGATAATGCAGATCAAGGTTCATCCCATAAACCAAAAATTGGCCTCATAGTTGGAATTGTTATAGGATTAGTTATTATCCTTTTCCTTGGTGGTCTGCTGTTCTTTTGGTGCAAGGGTAGACACAAGGGTTACAGGCGTGAAGTTTTTGTAGATGTTGCAGGTGAAGTAGATCGGCGAATTGCATTTGGTCAACTAAAAAGATTTGCTTGGAGAGAACTACAGATAGCCACAGACAATTTCAGTGAGAAAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTTGCTGATAACACAAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGTCCTGGGGGAGATGCAGCTTTCCAGCGTGAGGTTGAGATGATAAGTGTAGCTGTGCATAGGAACCTGTTACGGCTGATTGGGTTTTGTACTACCCCAACTGAGCGCCTCTTAGTTTATCCCTTCATGCAGAACTTAAGTGTGGCCTATCGTCTACGAGAACTCAAACCTGGGGAACCTGTTCTGGATTGGCCTACAAGAAAACGAGTGGCTCTAGGAACAGCTCGTGGCTTAGAATATCTTCACGAACATTGCAATCCTAAGATTATTCATCGGGATGTGAAGGCAGCTAATGTATTACTAGATGAAGATTTTGAAGCTGTTGTTGGTGATTTTGGTCTGGCAAAGTTAGTTGATGTTCGAAAAACTAACGTCACAACTCAAGTCCGTGGGACAATGGGCCACATAGCTCCAGAATATTTGTCCACTGGAAAGTCCTCGGAAAGGACTGATGTTTTTGGCTACGGGATTATGCTTTTAGAACTTGTTACAGGTCAACGAGCTATTGACTTTTCACGTTTAGAAGAGGAAGATGATGTGCTGTTACTTGATCATGTTAAGAAATTAGAACGAGAGAAAAGACTTGATGCAATTGTTGACCGCAACCTAAATAAAAATTACAACATACAAGAGGTAGAAATGATGATACAAGTCGCATTGCTCTGTACGCAAGCAACACCAGAGGACCGTCCACCAATGTCGGAGGTTGTAAGAATGCTTGAAGGAGAAGGGTTGGCTGAAAGGTGGGAGGAATGGCAGCATGTGGAGGTCAATCGGAGGCAAGAATACGAGAGATTACAAAGAAGATTTGACTGGGGAGAAGATTCGGTTTATAATCAAGATGCCATTGAGTTGTCTGGTGGGAGATGA 1833 0.4119 MSVEMDYIFVLLLLGCLCSSVLPDTQGDALYALKLSLNASVHQLNDWNQNQVNPCTWSRVYCDANNNVMQVSLAYMGFTGYLTPRIGVLKYLNALSLQGNGIAGNIPKELGNLTNLVRLDLENNKLTGEIPSSLGNLKKLQFLTLSQNNLRGTIPESLASLPFLINVLLDSNDLSGQIPEQLFKVPKYNFTGNNLNCGASYHQLCESDNADQGSSHKPKIGLIVGIVIGLVIILFLGGLLFFWCKGRHKGYRREVFVDVAGEVDRRIAFGQLKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLNKNYNIQEVEMMIQVALLCTQATPEDRPPMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYERLQRRFDWGEDSVYNQDAIELSGGR 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02120 610 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 610 - -
Cca09g02120 610 SUPERFAMILY L domain-like 25 195 - -
Cca09g02120 610 Gene3D Ribonuclease Inhibitor 23 207 IPR032675 -
Cca09g02120 610 Pfam Protein kinase domain 288 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02120 610 SMART serkin_6 287 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02120 610 CDD TM_EGFR-like 218 252 - -
Cca09g02120 610 Gene3D Phosphorylase Kinase; domain 1 256 363 - -
Cca09g02120 610 SUPERFAMILY Protein kinase-like (PK-like) 267 562 IPR011009 -
Cca09g02120 610 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524
Cca09g02120 610 ProSiteProfiles Protein kinase domain profile. 287 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02120 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Cca09g02120 610 Gene3D Transferase(Phosphotransferase) domain 1 364 581 - -
Cca09g02120 610 PANTHER LRR RECEPTOR-LIKE KINASE 8 610 - -
Cca09g02120 610 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02120 Cca-Chr9 46279778 46287747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02120 4 610 Receptor kinase-like Gene Family AT5G10290 78.748 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Cca09g02120 Pkinase 6.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02120 - - gmx:100793416 1136.32