Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02117 ATgagggacaaggacaaagaaaaagagatagagaagaagaagTACCCTATCGGCGCCGAGCATTACCTTCTCTACGAGGAGATTGGCCAAGGCGTAAGCGCTTCCGTGCACCGGGCGCTATGCGTTCCCTTCAACGAGGTCGTCGCCATCAAAATCCTCGACTTCGAACGTGACAATCGCGATCTCAACAACGTTTCTCGTGAGACCCAGACCATGATCCTCGTCGATCACCCTAACGTCCTCAAATCGCACTGCTCCTTCGTCGCCGAGCACAATCTTTGGGTGGTTATGCCGTTCATGGCCGGCGGTTCATGCCTCCACATATTGAAAGTCGCGCATCCCGATGGTTTTGAAGAGGTTGTCATTGCAACCATTCTCAAAGAGGTATTGAAGGGTTTGGAGTATCTTCACCATCACGGACACATCCACTGTGACGTCAAAGCCGGTAACATTCTCATTGATTCGCGCGGCACCGTTAAACTCGACGATTTCGGTGTTTCTGCCTGCCTATTAGATTCCGTCGACCTTGGTGCGAAAAGCACTTTAAGTCGGCATTTCGACGATCAATCCCTTGGTGTGAAGAGCACTTTAAGGTCGACATTTGAACGACCCGAACCTTGGTGTGAAGAGCACTTTAAGGTCGGCATTTCAATGACCCAAACCTTGGTGTGA 672 0.4792 MRDKDKEKEIEKKKYPIGAEHYLLYEEIGQGVSASVHRALCVPFNEVVAIKILDFERDNRDLNNVSRETQTMILVDHPNVLKSHCSFVAEHNLWVVMPFMAGGSCLHILKVAHPDGFEEVVIATILKEVLKGLEYLHHHGHIHCDVKAGNILIDSRGTVKLDDFGVSACLLDSVDLGAKSTLSRHFDDQSLGVKSTLRSTFERPEPWCEEHFKVGISMTQTLV 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02117 223 Gene3D Phosphorylase Kinase; domain 1 10 99 - -
Cca09g02117 223 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 11 184 - -
Cca09g02117 223 SMART serkin_6 22 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02117 223 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 11 184 - -
Cca09g02117 223 SUPERFAMILY Protein kinase-like (PK-like) 13 173 IPR011009 -
Cca09g02117 223 Pfam Protein kinase domain 25 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02117 223 Gene3D Transferase(Phosphotransferase) domain 1 103 200 - -
Cca09g02117 223 ProSiteProfiles Protein kinase domain profile. 22 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02117 223 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02117 Cca-Chr9 46251475 46252412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02117 10 175 MAP Kinase Kinase Kinase Kinase AT1G79640 80.723 2.72e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Cca09g02117 Pkinase 1.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02117 K08835 - ccaj:109813494 429.098