Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02116 ATGGCAATAACACCTCTTGGTAGTACATCTGCTGCTCAATGGGGAATTCATCCTCAGCTATTTCTACGATCCAGTATCACTGGCAAGGTTGCATCATCCAGCCACAATGTTACTGGGAGGGTAAGCTTTATGGCTGCAGCAAGTTCAAGCTTTTTTTCTCGAGATTCCACACTACTCAATGTGGGTTCGTCTCAAACTTTTAATCGTCGCAAGGGATCAAGATTGATTGTCAGAGCAGATGCAGATTACTACTCAGTCCTTGGGGTTTCAAAAAATGCTAGTAAATCTGAAATTAAGAGCGCTTATCGGAAACTTGCCCGAAATTATCACCCAGATGTCAACAAAGAACCAGGAGCTGAACAAAAATTTAAGGAAATTAGCAATGCATACGAGGTGTTATCAGATGATGAAAAACGATCTATATATGACAGATTTGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGGATGGGGCAGGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATCGTGGAGCAGGTTCGAGAGGTTCTTGGAATGGAGCAACTGATGGTGAAGATGAGTATTACAGTCTTGTTTTGAACTTTAAAGAAGCAGTTTTTGGCATAGAAAAAGAGATAGAGATAAGCCGATTAGAGAGCTGTGGAACTTGCAACGGTTCTGgggctaaaccagggactacaccatccagatgtagcacttgtggaggtcaaggccgggttgtctcatcaacaagaactccattaggcatcttccagcagtcaatgacatgctcttcatgcaatgggactggagaaatttcaacaccttgcaatacatgttccggggatggtcgggtgaggaaatcaaaacggaTAAGTCTGAAGGTCCCAGCTGGTGTGGACTCTGGAAGTCGTTTAAGGGTCCGAAATGAGGGGAATGCTGGAAGAAAAGGTGGTTCCCCTGGCGACCTCTTTGTTGTTATTGAGGTTATCCCAGATCCTGTCCTTAAACGAGATGACACCAACATTTTATGCACCTGCAAGGTTTCTTATATTGATGCAATCCTGGGGACTACAATTAAGGTTCCTACTGTAGACGGAATGGTGGATTTAAAAATTCCAGCTGGGACACAACCGAACACAACACTCGTTATGGCTAAGAAAGGTGTTCCCTACCTGAATAAGAACAATATGAGGGGTGATCAGTTGGTTCGTGTGCAAGTTGAAATCCCTAAAAGACTGAGCAATGATGAGAGAAAACTTATTGAGGAACTTGCTGATTTAAGCAAAGGCAAGACTGCCACCGGTAGGAGATAG 1317 0.3667 MAITPLGSTSAAQWGIHPQLFLRSSITGKVASSSHNVTGRVSFMAAASSSFFSRDSTLLNVGSSQTFNRRKGSRLIVRADADYYSVLGVSKNASKSEIKSAYRKLARNYHPDVNKEPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGQDFSNPFDLFESLFEGMNRGAGSRGSWNGATDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPSRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGEISTPCNTCSGDGRVRKSKRISLKVPAGVDSGSRLRVRNEGNAGRKGGSPGDLFVVIEVIPDPVLKRDDTNILCTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPYLNKNNMRGDQLVRVQVEIPKRLSNDERKLIEELADLSKGKTATGRR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02116 438 SMART dnaj_3 81 138 IPR001623 -
Cca09g02116 438 SUPERFAMILY HSP40/DnaJ peptide-binding domain 189 344 IPR008971 GO:0006457|GO:0051082
Cca09g02116 438 Gene3D DnaJ domain 79 184 IPR036869 -
Cca09g02116 438 Pfam DnaJ C terminal domain 196 411 IPR002939 -
Cca09g02116 438 Gene3D - 331 437 - -
Cca09g02116 438 SUPERFAMILY Chaperone J-domain 79 177 IPR036869 -
Cca09g02116 438 SUPERFAMILY HSP40/DnaJ peptide-binding domain 336 422 IPR008971 GO:0006457|GO:0051082
Cca09g02116 438 Hamap Chaperone protein DnaJ [dnaJ]. 79 434 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Cca09g02116 438 Pfam DnaJ central domain 221 284 IPR001305 GO:0031072|GO:0051082
Cca09g02116 438 PANTHER BNAA01G34580D PROTEIN 32 438 - -
Cca09g02116 438 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 208 288 IPR036410 -
Cca09g02116 438 CDD DnaJ_C 192 414 - -
Cca09g02116 438 Pfam DnaJ domain 82 143 IPR001623 -
Cca09g02116 438 ProSiteProfiles dnaJ domain profile. 82 146 IPR001623 -
Cca09g02116 438 CDD DnaJ 82 135 IPR001623 -
Cca09g02116 438 ProSiteProfiles Zinc finger CR-type profile. 208 289 IPR001305 GO:0031072|GO:0051082
Cca09g02116 438 TIGRFAM DnaJ_bact: chaperone protein DnaJ 82 427 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Cca09g02116 438 CDD DnaJ_zf 221 284 IPR001305 GO:0031072|GO:0051082
Cca09g02116 438 ProSitePatterns Nt-dnaJ domain signature. 123 142 IPR018253 -
Cca09g02116 438 Gene3D - 191 326 - -
Cca09g02116 438 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 32 438 - -
Cca09g02116 438 PRINTS DnaJ domain signature 84 102 IPR001623 -
Cca09g02116 438 PRINTS DnaJ domain signature 102 117 IPR001623 -
Cca09g02116 438 PRINTS DnaJ domain signature 118 138 IPR001623 -
Cca09g02116 438 PRINTS DnaJ domain signature 138 157 IPR001623 -
Cca09g02116 438 Gene3D - 221 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02116 Cca-Chr9 46240572 46247765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02116 83 143 C2H2 Transcription Factor Family AT1G74250 46.269 1.16e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02116 K03686 - gmx:100811006 829.32