Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02111 ATGGAGGAGGAAGAGCACGAGGTGTACGGTGGAGAGATCCCCGACGAGGGAGAGATGGAGGGAGACGTTGACATGTCCGCCGCCGACGATGACGCCGCCGTCAAGGAGCTCGACGAGATGAAGCGCCGGTTGAAGGAAATGGAAGAGGAAGCAGCTGCTCTTCGGGAGATGCAAGCCAAGGTCGAGAAGGAGATTGGCAGCGTTCAAGATCCTACTAATGCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATGCTCGGTCTGTTTTTGTTGGCAATGTTGATTATGCGTGCACACCAGAAGAAGTGCAGCAACACTTTCAATCCTGTGGCACTGTGAACAGAGTCACTATCCTGACAGATAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAGCTGAAGCTGTTCAAGAGGCTCTCCTGTTGAATGAATCTGAATTGCATGGACGTCAATTGAAGGTAAATTGTATCAATTGA 489 0.501 MEEEEHEVYGGEIPDEGEMEGDVDMSAADDDAAVKELDEMKRRLKEMEEEAAALREMQAKVEKEIGSVQDPTNAAASQANKEEADARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVNCIN 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02111 162 SUPERFAMILY RNA-binding domain, RBD 78 159 IPR035979 GO:0003676
Cca09g02111 162 SMART rrm1_1 88 159 IPR000504 GO:0003723
Cca09g02111 162 MobiDBLite consensus disorder prediction 65 84 - -
Cca09g02111 162 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Cca09g02111 162 PANTHER POLYADENYLATE-BINDING PROTEIN 3 1 159 - -
Cca09g02111 162 Gene3D - 25 160 IPR012677 -
Cca09g02111 162 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 162 IPR000504 GO:0003723
Cca09g02111 162 Coils Coil 30 64 - -
Cca09g02111 162 MobiDBLite consensus disorder prediction 1 23 - -
Cca09g02111 162 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 159 - -
Cca09g02111 162 CDD RRM_II_PABPs 88 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02111 Cca-Chr9 46208242 46213099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02111 84 158 Eukaryotic Initiation Factors Gene Family AT2G36660 34.211 7.02e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02111 K14396 - gmx:100789721 252.677