Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02108 ATGGAAAGCTATGAGATAATTAAAGATATAGGCTCAGGCAACTTTGGTGTCGCAAAGCTGGTAAAGGAAAAATGGACTGGTGAATTATACGCTATCAAGTTTATTGAGAGAGGATTCAAGattgatgaacacgtgcaaagggagattataaatcataggtccttgaagcatcccaatatcattagatttaaagaggtgttacttactccaactcatcttgcaatagtcatggaatatgctgccggaggagaactgtttgaaagaatatgcagtgctgggagattcagtgaggacgagGCGAGATATTTCTTTCAGCAATTGATTTCTGGAGTCAGCTATTGCCATTCAATGGAAATTTGCCACAGAGATCTTAAGCTGGAAAACACACTTCTAGATGGAAGCTCAGCACCACGACTTAAAATCTGCGACTTTGGTTACTCAAAGTCATCTGTTTTGCACTCCCAACCAAAATCTACTGTAGGAACCCCTGCCTATATTGCACCAGAGGTTTTGTCAAGAAGAGAATATGACGGGAAGGTCGCAGATGTTTGGTCTTGTGGGGTGACCTTATATGTGATGTTGGTTGGTGCATATCCTTTTGAAGACCCAGAAGACCCAAGAAACTTCAGAAAAACACTTCAGCGAATTCTTAGTGTCCACTATTCTATTCCAGACTACGTTCGTATCAGCAAAGAGTGCAGGCACCTTTTATCTCGAATATTTGTGGCCAACCCAGAAAAGAGAATTAGCATACCAGAGATTAAGATGCACCCTTGGTTCCTAAAGAACTTACCACTAGAATTTATGGAGGAGGGTGAAGAGGTGTTGCAAAATGATGTGAATGAGTCTTGTGAGACACAAAGCATTGAAGAAATACTGTCCATAATTCAAGAGGGTAGGAAAGCGGGTGAGGGCCCAAAAGTAGGTGAGCAGTTTGTTGGGGGCAGCATGGACCTTGATGATATTGATGCAGATGCTGACATCGATGACATCGAGACAAGCGGTGATTTTGTCTGTGCACTGTGA 1026 0.3509 MESYEIIKDIGSGNFGVAKLVKEKWTGELYAIKFIERGFKIDEHVQREIINHRSLKHPNIIRFKEVLLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKVADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTLQRILSVHYSIPDYVRISKECRHLLSRIFVANPEKRISIPEIKMHPWFLKNLPLEFMEEGEEVLQNDVNESCETQSIEEILSIIQEGRKAGEGPKVGEQFVGGSMDLDDIDADADIDDIETSGDFVCAL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02108 341 SUPERFAMILY Protein kinase-like (PK-like) 2 270 IPR011009 -
Cca09g02108 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Cca09g02108 341 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02108 341 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02108 341 Gene3D Transferase(Phosphotransferase) domain 1 80 266 - -
Cca09g02108 341 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Cca09g02108 341 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02108 341 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 3 335 - -
Cca09g02108 341 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Cca09g02108 341 CDD STKc_SnRK2 4 259 - -
Cca09g02108 341 PANTHER SERINE/THREONINE KINASE 3 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02108 Cca-Chr9 46186105 46190139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02108 4 268 CBL-interacting serine-threonine protein kinases AT5G25110 43.885 3.78e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Cca09g02108 Pkinase 1.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02108 K14498 - gmx:100807981 637.491