Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02103 ATGAAGAGACTTGCCAGCTCCGATTCTCTCGGTGCTCTCATCACGATTTGTCCTCCAACAGACGAACATAGTCCGAGGAACAACCACGTGTATGGCAGGGAGTTTCAGTCCATGCTTGAAGGACTCGACGAAGAAGGGTGCGTGGAGGAACCAGGGCACCACGCTGAGAAGAAACGAAGACTAAGCGTGGATCAGGTTAAGGCCTTGGAGAAGAACTTCGAAGTAGAGAACAAACTCGAACCTGACAGAAAAGTTAAGCTGGCGCAAGAGCTTGGCTTGCAACCACGACAAGTAGCGGTTTGGTTCCAAAACCGTCGTGCCAGGTGGAAAACAAAGCAATTGGAAAGAGACTATGGAGTTCTCAAAGCCAAATATGAAACGCTTAAACTTAGCTTCGACACCCTCCAACAAGACAACGAAGCGTTACTCAAAGAGATTAAGGAGTTGAAATCGAGGGGGGAGGGGGAGAACACCGAAAGCGATGGTTCGGTGAAGGAAGAGATGGTAACTGTGGCGTTTTGTGAAACCCCCATTCCTGGATCGGAGACGAAGGAGTTGAGTAATGAGTGTTTGAATAAGAGTGAAGGTTCGGTTTTGAAAGACGGTTCTTCGGAAAGCGACTCTAGCGCGATCCTGAACGATGAGAACAACAATTCGTCATGCGGGGTTCTGCAAAGTGAGAGCCTGATGAACTGCTTCCAGTTTCAGAAGCAGTACGTGAAGATGGAGGATGAGGATGAGGAGCAGAATTTTCTGAGTGCGGACGAGGCGTGCAATTTCTTCGCGGATGAACAAGCGCCAACGCTGCAGTGGTACTGTTCAGAAGAGTGGAGTTAA 837 0.4898 MKRLASSDSLGALITICPPTDEHSPRNNHVYGREFQSMLEGLDEEGCVEEPGHHAEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKAKYETLKLSFDTLQQDNEALLKEIKELKSRGEGENTESDGSVKEEMVTVAFCETPIPGSETKELSNECLNKSEGSVLKDGSSESDSSAILNDENNNSSCGVLQSESLMNCFQFQKQYVKMEDEDEEQNFLSADEACNFFADEQAPTLQWYCSEEWS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02103 278 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Cca09g02103 278 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Cca09g02103 278 SMART HOX_1 55 116 IPR001356 GO:0003677
Cca09g02103 278 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Cca09g02103 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 225 270 IPR045224 GO:0003700
Cca09g02103 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 227 IPR045224 GO:0003700
Cca09g02103 278 Coils Coil 125 159 - -
Cca09g02103 278 MobiDBLite consensus disorder prediction 197 217 - -
Cca09g02103 278 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Cca09g02103 278 SUPERFAMILY Homeodomain-like 39 114 IPR009057 -
Cca09g02103 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 227 - -
Cca09g02103 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 225 270 - -
Cca09g02103 278 CDD homeodomain 57 113 IPR001356 GO:0003677
Cca09g02103 278 Pfam Homeobox associated leucine zipper 112 152 IPR003106 GO:0006355|GO:0043565
Cca09g02103 278 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Cca09g02103 278 Gene3D - 52 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02103 Cca-Chr9 46056277 46058597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02103 1 278 Homeobox Transcription Factor Family AT4G40060 50.498 9.80e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca09g02103 Homeodomain 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02103 K09338 - gmx:100796213 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02103 09 46056277 46058597 Cca01g00175 01 1719383 1722425 PCT