Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02100 ATGGGTCCTCCTCCTCAACACAACCTAACCGGAGTAGTCTCACAACATGCGGTACCCCTCCAAGAACACCACCGCCATGCCCTTCACATGGCCATGGTGGTCATGGCGTGCATGGTAGGCCTCGTCATGATCCTCTGCACCGCCTCCCTTCTCATAAGGTTATTCACCTCTCGGAGTTGGAGATATAGCAGCAACCGCAACCGCAACAGAAGAGACGCAGATGCCCCAATACTCTTCGACGTTAACGGAGATTCCAACGCTTCGGATAACGACCATGAAGATTTAACGGTAGTCCACCCCATATGGTACATCCGCACCGTGGGCCTCCAACAATCGCTCATAGATTCCATCACCGTCTTCAGATACCGGAAAGAAGACGGAATAATAGACGCCACCGACTGTTCCGTTTGCCTCGGGGAATTCCAACACGACCAGAGTCTTAGGTTGTTGCCCAAGTGCAGCCACGCCTTCCACATCCCTTGCATTGACACGTGGCTCACCTCACACAAAAACTGTCCCCTCTGCCGTGCACCCGTGCTCCATCATCAAACGGATACAAGCGTTTCTGTTTCGGGTGATCAAGAGCTCCACGTGGAGAATTCTGATGAGGAGAGCAGTGAAGTGAGGGTTCAGCATGGACATGGTCCTCGTGTGGATGTATCTTCTACTGGTAAAGATTTGCTCTTGTTGTTGCCAAATTGTTCGGGTTTAGAAGAGGCAACGCAGCCTCTGAGGAGGACTGTTTCCGTGGATTCTTCTTCAGTGCTGTTGTTGGGTGACGTGGCGGTCCATTTAGATGGTGGAAAAGCGAGTGTTGGCAAGCGTGGTAGTGAGACTTCGACTTCTTCGGCGCTTAACAAGGTGGCTTCAACTGGACTTGCGTTGCACAAGAGGACCATGTCAATGAGAAGGTCCTTTTCGCATAACAGCAAATTTTTGTTCTCCACACACTCTAGGAGCCAGAGTTCAACTCTTCCTTTGTAA 984 0.5112 MGPPPQHNLTGVVSQHAVPLQEHHRHALHMAMVVMACMVGLVMILCTASLLIRLFTSRSWRYSSNRNRNRRDADAPILFDVNGDSNASDNDHEDLTVVHPIWYIRTVGLQQSLIDSITVFRYRKEDGIIDATDCSVCLGEFQHDQSLRLLPKCSHAFHIPCIDTWLTSHKNCPLCRAPVLHHQTDTSVSVSGDQELHVENSDEESSEVRVQHGHGPRVDVSSTGKDLLLLLPNCSGLEEATQPLRRTVSVDSSSVLLLGDVAVHLDGGKASVGKRGSETSTSSALNKVASTGLALHKRTMSMRRSFSHNSKFLFSTHSRSQSSTLPL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02100 327 Pfam Ring finger domain 133 176 IPR001841 -
Cca09g02100 327 MobiDBLite consensus disorder prediction 196 214 - -
Cca09g02100 327 SMART ring_2 134 175 IPR001841 -
Cca09g02100 327 CDD mRING-H2-C3H2C2D_ZSWM2 134 176 - -
Cca09g02100 327 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 15 319 IPR044675 -
Cca09g02100 327 SUPERFAMILY RING/U-box 114 182 - -
Cca09g02100 327 PANTHER RING-H2 FINGER PROTEIN ATL54 15 319 - -
Cca09g02100 327 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Cca09g02100 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 186 IPR013083 -
Cca09g02100 327 MobiDBLite consensus disorder prediction 190 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02100 Cca-Chr9 46018776 46020457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02100 95 301 C3H Transcription Factor Family AT4G33565 40.580 5.86e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02100 - - ccaj:109813509 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02100 09 46018776 46020457 Cca01g00172 01 1659726 1660674 PCT