Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02099 ATGGGAAGAACCAAAGTTTCCACCCTCTCTGCCAATAACCACAATAATAATTACATGCTTCCTTATTCCAACCCTATAAGAGAAACTCTCGTTAAAAAGCCACATAACCTCAAAGATCGATTCCCCTTTTCACTCTTTGAATTATTCCGCCGCCTCATTCATTCAAGGAAAGTTGATGGGGGCTCACGAACTGAGGAAGAGGAGAAAGTCTACTCTTGGTTACACACCTTGGCTCAGTCTGACAAAAACTTGGTCTTTGAGTACGTTAGGTCCACTGAAAGAGGCTTAAGTTTCACAGAAGCTGAGAGGAGACTGAGGGAAAATGGGCCAAATGTTCCACTTGAGTATTCTTTTCCAAAATGGTGGCATCTTCTATGGAACGCTCTTTTCCACCCTTTCAATCTCATTCTGATTGTTTTGGCTGTTTTATCATTCATTACCCTTGACTATCCAAATGGAGCAATCATGCTCGTATTGGTTTTCATCAGTGTCACCCTCCGTTTCTATCAGGAATACAGCAGCTCAAAGGCAGCGATGAAGCTTTCAGAATTTGTAAGATGTCCTATAAAAGTTCAAAGATGCGCGGGTAGAATTGTTCAGAAAGAACTTGTAGTTCAAGTTGATCAGAGGGAAGTAGTTCCAGGTGACATTGTGATTTTTGAACCTGGTGACCTTTTTCCTGGAGATATCAGGTTGTTATCTTCTAAACAACTTGTTGTAAGCCAGGCCTCACTAACCGGGGAATCTTGGACAACTGACAAAACTGCTGATATCAGAGAAGATCTCAGCACTCCTTTATTAGATTTAAAGAACATCTGTTTTATGGGCACAAACGTGGTATCAGGTACTGGAACAGGCTTAGTGATTTCAACTGGATCCAATACTTACATGAGCACCATGTTTTCAAAATTTGGGAAGAAGATGCCACCAGATGACTTCGAAAAGGGCCTCAGATGGATATTTTACTTGCTTATTTCTGTTATGCTAGCAGTCGTTACCATCATGTTTGTGATAAACTACACTACATCTCTTAATTTGAGTGAAAGTGTTCTTTTTGCCATCTCAGTTGCATCTGCTCTGAATCCTCAGATGCTTCCCCTCATCATTAACACATGCCTTGCAAAAGGAGCACTTGCTATGGCTAAAGACAGATGTATAGTAAAGAGTTTAACATCTATACGTGAGATGGGATCAATGGATATACTCTGTATTGACAAGACAGGCACACTTACGATGAATCATGCAATCATGGTTAACCATCTTGACTGCAGGGGTTTATCCCAAGAAAAAGTTTTACGCTATGCCTTCCTCAACTCTTACTTTAAGTCTGATCAGAAGTATCCTTTAGATGATGCAATTCTGGCATATGTATATTCAAATGGATTCAAGTTTCAGCCATCTAAGTGGAGAAAGATAGATGAGATTCCTTTTGATTTCATAAGAAGAAGAGTATCTGTCATCATAGAAACAAAAGACAGACACTCACAATTCTTTGGCAGGTTCATGGTAACAAAAGGAGCATTGCTAGAAGTGTTGAGAGTTTGTTCTTTCATTGAGAATTTTGATAAAGATGAAATTTCCATCTTCACTACATATGATTATCAGCGGATTTTAAATCTCTCAGAAGATTTGAGCAATGAGGGGCTAAGGATTATAGGAGTAGCTATAAGGAAGCTGGAAATGCTGCAAACACGCGAAACAAGTAATGAAAGCAAAAGAGAAGACGAGGATATTGAAAGAGACATGGTGTTCCTTGGCTTCATAACCTTTTTCGACCCTCCCAAGGACTCAGCAAAGCAAGCACTGTGGCGTTTGTCTGAGAAGGGAGTGGAAGCCAAGGTTCTAACCGGTGATTCTCTCTCCTTGACAACAAGGGTATGCAGGGAAGTTGGCATAAGCACCTCACATGTAATAACAGGTCCTGAACTAGAGCAACTAGACCAAGACACTTTCCATGATACAGTTAAACGAGCCACGGTACTAGCTCGTCTCACCCCAATTCAGAAGCTCCGAGTGGTGCAATCCTTGCAAACAATTGGAAACCACGTTGTTGGGTTCTTAGGAGATGGAGTGAATGATTCACTGGCCTTAGATGCTGCCAATGTAAGCATTTCTGTGGACTCGGGTGTAGCCATTGCCAAAGATATGGCAGATATTATCTTACTTGAGAAAGACCTCAACGTGCTTGTTGCAGGAGTGGAGCATGGTAGACTCACCTTTGGCAACACAATGAAGTATGTTAAGATGTCGGTGATTGCTAACTTGGGAAGTGTCATTTCACTCCTCATAGCAACACTGTTATTCAAGTATGAGCCCTTGACTTCTAGACAGCTTCTTACTCAGAATTTCATATACAGTGTGGGACAGATTGCCATCCCTTGGGACAAGATGGATGAGGAGTTTGTTAAGACACCTCAGAAGTCCTCAGAGAGAGGGTTGTCCATGTTCATACTGTGGAATGGACCAGTGTGCACCCTCTGTGATGTGACAACACTCTTGTTTCTTTGGTTTTACTACAAGGCTTACACTGATGTGACTCAGAAGTTTTTCCATTCAGCTTGGTTCATTGAAGGCCTACTCTTGCAGACACTCATCATCCACTTGATCAGGACTGAGAAAATTCCTTTCATACAGGATGTTGCATCTTGGCCTGTGATTTTCTCCACTGTTGTGACATCTGCAATTGGAATTGCACTTCCATTCACACCCATTGGAAAGGTCATGGAATTCACCCTCCTACCTCTCTCATATTTTGGATTTTTGGCAGTTCTTTTTCTGGGATATTTTACAGTTGGCCAGGTGGTTAAGAGACTTTACATATTGGTTTATAAGAGATGGCTTTGA 2844 0.4135 MGRTKVSTLSANNHNNNYMLPYSNPIRETLVKKPHNLKDRFPFSLFELFRRLIHSRKVDGGSRTEEEEKVYSWLHTLAQSDKNLVFEYVRSTERGLSFTEAERRLRENGPNVPLEYSFPKWWHLLWNALFHPFNLILIVLAVLSFITLDYPNGAIMLVLVFISVTLRFYQEYSSSKAAMKLSEFVRCPIKVQRCAGRIVQKELVVQVDQREVVPGDIVIFEPGDLFPGDIRLLSSKQLVVSQASLTGESWTTDKTADIREDLSTPLLDLKNICFMGTNVVSGTGTGLVISTGSNTYMSTMFSKFGKKMPPDDFEKGLRWIFYLLISVMLAVVTIMFVINYTTSLNLSESVLFAISVASALNPQMLPLIINTCLAKGALAMAKDRCIVKSLTSIREMGSMDILCIDKTGTLTMNHAIMVNHLDCRGLSQEKVLRYAFLNSYFKSDQKYPLDDAILAYVYSNGFKFQPSKWRKIDEIPFDFIRRRVSVIIETKDRHSQFFGRFMVTKGALLEVLRVCSFIENFDKDEISIFTTYDYQRILNLSEDLSNEGLRIIGVAIRKLEMLQTRETSNESKREDEDIERDMVFLGFITFFDPPKDSAKQALWRLSEKGVEAKVLTGDSLSLTTRVCREVGISTSHVITGPELEQLDQDTFHDTVKRATVLARLTPIQKLRVVQSLQTIGNHVVGFLGDGVNDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSVISLLIATLLFKYEPLTSRQLLTQNFIYSVGQIAIPWDKMDEEFVKTPQKSSERGLSMFILWNGPVCTLCDVTTLLFLWFYYKAYTDVTQKFFHSAWFIEGLLLQTLIIHLIRTEKIPFIQDVASWPVIFSTVVTSAIGIALPFTPIGKVMEFTLLPLSYFGFLAVLFLGYFTVGQVVKRLYILVYKRWL 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02099 947 Pfam haloacid dehalogenase-like hydrolase 399 701 - -
Cca09g02099 947 PANTHER CATION TRANSPORTING ATPASE 55 946 - -
Cca09g02099 947 Pfam Cation transporter/ATPase, N-terminus 87 144 IPR004014 -
Cca09g02099 947 Gene3D - 187 291 - -
Cca09g02099 947 SFLD p-type atpase 385 737 IPR044492 -
Cca09g02099 947 SFLD C1.7: P-type atpase like 385 737 - -
Cca09g02099 947 Gene3D - 400 724 IPR023214 -
Cca09g02099 947 Pfam E1-E2 ATPase 201 382 - -
Cca09g02099 947 PRINTS Magnesium-transporting ATPase signature 316 332 IPR006415 GO:0015444|GO:0015693|GO:0016021
Cca09g02099 947 PRINTS Magnesium-transporting ATPase signature 333 352 IPR006415 GO:0015444|GO:0015693|GO:0016021
Cca09g02099 947 PRINTS Magnesium-transporting ATPase signature 437 450 IPR006415 GO:0015444|GO:0015693|GO:0016021
Cca09g02099 947 PRINTS Magnesium-transporting ATPase signature 745 760 IPR006415 GO:0015444|GO:0015693|GO:0016021
Cca09g02099 947 PRINTS Magnesium-transporting ATPase signature 795 808 IPR006415 GO:0015444|GO:0015693|GO:0016021
Cca09g02099 947 PRINTS Magnesium-transporting ATPase signature 815 831 IPR006415 GO:0015444|GO:0015693|GO:0016021
Cca09g02099 947 PRINTS Magnesium-transporting ATPase signature 850 871 IPR006415 GO:0015444|GO:0015693|GO:0016021
Cca09g02099 947 PRINTS Magnesium-transporting ATPase signature 900 921 IPR006415 GO:0015444|GO:0015693|GO:0016021
Cca09g02099 947 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 156 449 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g02099 947 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 654 766 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g02099 947 Gene3D - 150 899 - -
Cca09g02099 947 ProSitePatterns E1-E2 ATPases phosphorylation site. 405 411 IPR018303 -
Cca09g02099 947 SMART Cation_ATPase_N_a_2 76 149 IPR004014 -
Cca09g02099 947 SUPERFAMILY Calcium ATPase, transduction domain A 199 301 IPR008250 -
Cca09g02099 947 Gene3D - 415 591 IPR023299 GO:0000166
Cca09g02099 947 TIGRFAM ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 68 946 IPR006415 GO:0015444|GO:0015693|GO:0016021
Cca09g02099 947 PANTHER MAGNESIUM-TRANSPORTING ATPASE, P-TYPE 1 55 946 - -
Cca09g02099 947 SUPERFAMILY HAD-like 399 737 IPR036412 -
Cca09g02099 947 SUPERFAMILY Calcium ATPase, transmembrane domain M 91 944 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02099 Cca-Chr9 46004394 46011109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02099 94 852 Primary Pumps ATPases(2) AT1G10130 26.212 3.23e-65 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02099 K01531 - gmx:100795153 1708.35