LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g02088	ATGCTTGTCTGTGCAGTTCTCACTCACACTCCTCCGCACAAACTCACTCTCTGCCTCTCCAATCCCAAACCCATCCGATTTTCCTCAAATTCCGTGACCCTCCCCCACACCACCGCCCCCTCCTGCTTCCTCCAAACCCTCAACGCCACCCCTAcctccgactccgatgacggcctccgcctcaccgtctcttccgccgccgcactcgcctcctccatccgccAAGCTTCCAACTCCTCCGTCGAGTTCACCCAGCGCCTCGAGAAGGACCGCCAGAGCGGACTCGTGCTTCCCAGCACCGACTTCCACCGCCTCTGCCTCCACCAGCTCCACCTCTTGCGCAGGATCGTTCCCCAAGCCCTCCTCTCGGTGTATGTTAGACCAGCCGGTAGTTATGTGATGGACCGATTGGAACTGAGGCGGGTTGCCCTGTACCCTGGAGATGCAGAATCAGAGGCAGAGGGCATTGTCATTCTTGTGGGCCATTTTAATATTCCTGCAGGCTTGCGTGCTGCTGAGGCAACGCTTTCCAATATGCAAGTTAATGTTGTCCCTGAATGTAAGGCTGTGGTTCTTCCGATGGTGAAGCACCCATTTGTTGTTGGTTTCTTGGTTGCCGAGCTTCCATTGGTGGAGCCGGAACAGTGTCAGAAACCTCAAAGTGATGGGCCAGATAACCACATGTCTGTTGAGGAACCTTATTCTTTGCCTCCCTTTATGGATTTAGACAAGAAGTCGAGGGAAATTCAGACTCTTCCCATCAAGGATGAAGCAGTTGATATGCATAACTTCACTTCTGAGCAAAGATCAAATGCTGTCAACATTTCACAGTCTCTAGCCATGGCATATGTCATGGATCAGAAAGCAATGTTACTTCAGCAATCAACATGGCAAAATAATGTCAGGATGGGCAATTTGGTTGAGCAAATCCGTGGTCCACTTTCAAGTATTCAAACCTTGAGTAAAATCCTGTCTACGCAGACAAAGAGAACCCAGATTTCATATGACATTGTTGAAGACCTCTTGGTGCAAGGTGATCGACTGAGGGATGTTTTCCAACAACTCCAGGATGCCGTTTATTTGACGAAGACTAATATAGTCCGCTACAATGAAGAAGCTATCAAGAAAATGAATGGTTCTACTCACATACTTGCTGAATCAGCAAGATCTCAATTATTGGATAACTCTCCAGGGGATGGCTCTGCAAACAAAATGAAAAAATCTAGCGAGTCTCTTTCTCTAAGTGCTGCTGTCCAGGATATAGAGATGCCGTTACCACCTTTGGCTCTTGCTCCATTGCAACATGGAATCAGACCATGCAATGTTTCTGAAGTATTGGCAGACCTGGTTGATTCTGTGAGGCCTCTTGCACAGAGTCAAAAACGTGTAGTAGAACTAAGTGAACTCTCATCACCTTTGCTAGCTGCTGTAGAGGAACCTGCGTTGCGCCAGGCTTTCAGCAATCTTATTGAAGGTGCTTTACTACGCACACATGTTGGAGGAAAGGTTGAAATTGTATCTACTACTGCACCCGCTGGTGGTACCCTTGTACTTATTGATGATGATGGACCTGATATGCACTATATGACTCAGATGCACTCACTCACACCTTATGGACAAGAACTGTTGTCTGATGATATGATCGAAGACAATATGACTTGGAACTTTGTTGCTGGGCTGACTGTTGCCCGTGAGATACTAGAGAGCTATGGCTGTGTCGTTCGCATTGTTTCACCTCGGATTAAAGATGCTCCACTTGGGGCTGGGGGAACTCGTGTGGAACTCTGGCTTCCTTCGTCAATTGTACAATCTGATTTGAGCAGCCACGCCCAAGAGTTTAAGATTGTGAAATTAAGGGGTGAGGAGTACTCTAAGTCATCGCGTGACGACGACAACCACGGTACCCACACCGCTAGCACTGCCTCGGGGTCGGTGGTTTCTGGCGCGAGTTTGTTCAGCTACGCGTCCATGACAACATGTGGGATGGCCACGCGCGTGAGAGTCGCTGTTTACAAGAGAGACCACGTAGCTATCGGATCTTTTTCTGCAATGGAGAAAGGGATTTTGGTTTCTTGCTCCGTTGGGAATGCAGGTCCTACTTCCGATAGTCTCTCCAATGTGGCTCCATGGATTACTCGGGTCCTAGTTACACAGGGAATGCTAGCAACGCCACGAATGGGAACTTGTGCGTGA	2193	0.4679	MLVCAVLTHTPPHKLTLCLSNPKPIRFSSNSVTLPHTTAPSCFLQTLNATPTSDSDDGLRLTVSSAAALASSIRQASNSSVEFTQRLEKDRQSGLVLPSTDFHRLCLHQLHLLRRIVPQALLSVYVRPAGSYVMDRLELRRVALYPGDAESEAEGIVILVGHFNIPAGLRAAEATLSNMQVNVVPECKAVVLPMVKHPFVVGFLVAELPLVEPEQCQKPQSDGPDNHMSVEEPYSLPPFMDLDKKSREIQTLPIKDEAVDMHNFTSEQRSNAVNISQSLAMAYVMDQKAMLLQQSTWQNNVRMGNLVEQIRGPLSSIQTLSKILSTQTKRTQISYDIVEDLLVQGDRLRDVFQQLQDAVYLTKTNIVRYNEEAIKKMNGSTHILAESARSQLLDNSPGDGSANKMKKSSESLSLSAAVQDIEMPLPPLALAPLQHGIRPCNVSEVLADLVDSVRPLAQSQKRVVELSELSSPLLAAVEEPALRQAFSNLIEGALLRTHVGGKVEIVSTTAPAGGTLVLIDDDGPDMHYMTQMHSLTPYGQELLSDDMIEDNMTWNFVAGLTVAREILESYGCVVRIVSPRIKDAPLGAGGTRVELWLPSSIVQSDLSSHAQEFKIVKLRGEEYSKSSRDDDNHGTHTASTASGSVVSGASLFSYASMTTCGMATRVRVAVYKRDHVAIGSFSAMEKGILVSCSVGNAGPTSDSLSNVAPWITRVLVTQGMLATPRMGTCA	730

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g02088	730	PANTHER	CHLOROPLAST SENSOR KINASE, CHLOROPLASTIC	27	608	-	-
	Cca09g02088	730	SUPERFAMILY	Subtilisin-like	624	714	IPR036852	GO:0004252\|GO:0006508
	Cca09g02088	730	CDD	HATPase	482	597	-	-
	Cca09g02088	730	Gene3D	Peptidase S8/S53 domain	621	672	IPR036852	GO:0004252\|GO:0006508
	Cca09g02088	730	Gene3D	Peptidase S8/S53 domain	673	714	IPR036852	GO:0004252\|GO:0006508
	Cca09g02088	730	MobiDBLite	consensus disorder prediction	388	408	-	-
	Cca09g02088	730	Gene3D	-	432	599	IPR036890	-
	Cca09g02088	730	SUPERFAMILY	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	437	598	IPR036890	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g02088	Cca-Chr9	45907828	45919767	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g02088	624	714	Subtilisin-like Serine Gene Family	AT5G67360	53.846	1.19e-29	123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g02088	-		-	gmx:100792515	990.334

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca09g02088	09	45907828	45919767	Cca09g02088	09	45907828	45919767	ECH

Showing 1 to 1 of 1 entries