Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02088 ATGCTTGTCTGTGCAGTTCTCACTCACACTCCTCCGCACAAACTCACTCTCTGCCTCTCCAATCCCAAACCCATCCGATTTTCCTCAAATTCCGTGACCCTCCCCCACACCACCGCCCCCTCCTGCTTCCTCCAAACCCTCAACGCCACCCCTAcctccgactccgatgacggcctccgcctcaccgtctcttccgccgccgcactcgcctcctccatccgccAAGCTTCCAACTCCTCCGTCGAGTTCACCCAGCGCCTCGAGAAGGACCGCCAGAGCGGACTCGTGCTTCCCAGCACCGACTTCCACCGCCTCTGCCTCCACCAGCTCCACCTCTTGCGCAGGATCGTTCCCCAAGCCCTCCTCTCGGTGTATGTTAGACCAGCCGGTAGTTATGTGATGGACCGATTGGAACTGAGGCGGGTTGCCCTGTACCCTGGAGATGCAGAATCAGAGGCAGAGGGCATTGTCATTCTTGTGGGCCATTTTAATATTCCTGCAGGCTTGCGTGCTGCTGAGGCAACGCTTTCCAATATGCAAGTTAATGTTGTCCCTGAATGTAAGGCTGTGGTTCTTCCGATGGTGAAGCACCCATTTGTTGTTGGTTTCTTGGTTGCCGAGCTTCCATTGGTGGAGCCGGAACAGTGTCAGAAACCTCAAAGTGATGGGCCAGATAACCACATGTCTGTTGAGGAACCTTATTCTTTGCCTCCCTTTATGGATTTAGACAAGAAGTCGAGGGAAATTCAGACTCTTCCCATCAAGGATGAAGCAGTTGATATGCATAACTTCACTTCTGAGCAAAGATCAAATGCTGTCAACATTTCACAGTCTCTAGCCATGGCATATGTCATGGATCAGAAAGCAATGTTACTTCAGCAATCAACATGGCAAAATAATGTCAGGATGGGCAATTTGGTTGAGCAAATCCGTGGTCCACTTTCAAGTATTCAAACCTTGAGTAAAATCCTGTCTACGCAGACAAAGAGAACCCAGATTTCATATGACATTGTTGAAGACCTCTTGGTGCAAGGTGATCGACTGAGGGATGTTTTCCAACAACTCCAGGATGCCGTTTATTTGACGAAGACTAATATAGTCCGCTACAATGAAGAAGCTATCAAGAAAATGAATGGTTCTACTCACATACTTGCTGAATCAGCAAGATCTCAATTATTGGATAACTCTCCAGGGGATGGCTCTGCAAACAAAATGAAAAAATCTAGCGAGTCTCTTTCTCTAAGTGCTGCTGTCCAGGATATAGAGATGCCGTTACCACCTTTGGCTCTTGCTCCATTGCAACATGGAATCAGACCATGCAATGTTTCTGAAGTATTGGCAGACCTGGTTGATTCTGTGAGGCCTCTTGCACAGAGTCAAAAACGTGTAGTAGAACTAAGTGAACTCTCATCACCTTTGCTAGCTGCTGTAGAGGAACCTGCGTTGCGCCAGGCTTTCAGCAATCTTATTGAAGGTGCTTTACTACGCACACATGTTGGAGGAAAGGTTGAAATTGTATCTACTACTGCACCCGCTGGTGGTACCCTTGTACTTATTGATGATGATGGACCTGATATGCACTATATGACTCAGATGCACTCACTCACACCTTATGGACAAGAACTGTTGTCTGATGATATGATCGAAGACAATATGACTTGGAACTTTGTTGCTGGGCTGACTGTTGCCCGTGAGATACTAGAGAGCTATGGCTGTGTCGTTCGCATTGTTTCACCTCGGATTAAAGATGCTCCACTTGGGGCTGGGGGAACTCGTGTGGAACTCTGGCTTCCTTCGTCAATTGTACAATCTGATTTGAGCAGCCACGCCCAAGAGTTTAAGATTGTGAAATTAAGGGGTGAGGAGTACTCTAAGTCATCGCGTGACGACGACAACCACGGTACCCACACCGCTAGCACTGCCTCGGGGTCGGTGGTTTCTGGCGCGAGTTTGTTCAGCTACGCGTCCATGACAACATGTGGGATGGCCACGCGCGTGAGAGTCGCTGTTTACAAGAGAGACCACGTAGCTATCGGATCTTTTTCTGCAATGGAGAAAGGGATTTTGGTTTCTTGCTCCGTTGGGAATGCAGGTCCTACTTCCGATAGTCTCTCCAATGTGGCTCCATGGATTACTCGGGTCCTAGTTACACAGGGAATGCTAGCAACGCCACGAATGGGAACTTGTGCGTGA 2193 0.4679 MLVCAVLTHTPPHKLTLCLSNPKPIRFSSNSVTLPHTTAPSCFLQTLNATPTSDSDDGLRLTVSSAAALASSIRQASNSSVEFTQRLEKDRQSGLVLPSTDFHRLCLHQLHLLRRIVPQALLSVYVRPAGSYVMDRLELRRVALYPGDAESEAEGIVILVGHFNIPAGLRAAEATLSNMQVNVVPECKAVVLPMVKHPFVVGFLVAELPLVEPEQCQKPQSDGPDNHMSVEEPYSLPPFMDLDKKSREIQTLPIKDEAVDMHNFTSEQRSNAVNISQSLAMAYVMDQKAMLLQQSTWQNNVRMGNLVEQIRGPLSSIQTLSKILSTQTKRTQISYDIVEDLLVQGDRLRDVFQQLQDAVYLTKTNIVRYNEEAIKKMNGSTHILAESARSQLLDNSPGDGSANKMKKSSESLSLSAAVQDIEMPLPPLALAPLQHGIRPCNVSEVLADLVDSVRPLAQSQKRVVELSELSSPLLAAVEEPALRQAFSNLIEGALLRTHVGGKVEIVSTTAPAGGTLVLIDDDGPDMHYMTQMHSLTPYGQELLSDDMIEDNMTWNFVAGLTVAREILESYGCVVRIVSPRIKDAPLGAGGTRVELWLPSSIVQSDLSSHAQEFKIVKLRGEEYSKSSRDDDNHGTHTASTASGSVVSGASLFSYASMTTCGMATRVRVAVYKRDHVAIGSFSAMEKGILVSCSVGNAGPTSDSLSNVAPWITRVLVTQGMLATPRMGTCA 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02088 730 PANTHER CHLOROPLAST SENSOR KINASE, CHLOROPLASTIC 27 608 - -
Cca09g02088 730 SUPERFAMILY Subtilisin-like 624 714 IPR036852 GO:0004252|GO:0006508
Cca09g02088 730 CDD HATPase 482 597 - -
Cca09g02088 730 Gene3D Peptidase S8/S53 domain 621 672 IPR036852 GO:0004252|GO:0006508
Cca09g02088 730 Gene3D Peptidase S8/S53 domain 673 714 IPR036852 GO:0004252|GO:0006508
Cca09g02088 730 MobiDBLite consensus disorder prediction 388 408 - -
Cca09g02088 730 Gene3D - 432 599 IPR036890 -
Cca09g02088 730 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 437 598 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02088 Cca-Chr9 45907828 45919767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02088 624 714 Subtilisin-like Serine Gene Family AT5G67360 53.846 1.19e-29 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02088 - - gmx:100792515 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02088 09 45907828 45919767 Cca09g02088 09 45907828 45919767 ECH