Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02086 ATGTCCAAACCCTGGGGCATCGGAGCCTGGGCCgccgattccgagcgggccgaggccgaggagcgcgaggcccaggcggctgctgcggccgCCGAGACCCAAAACTTCCCCAGCCTCAAGGAGGCCGTTAACTCCAAGCCCAAAAAGAAGAAAGGAACAACCATCACGCTTTCCGAGTTCAACCGAGGCGGTTTCGCCTCCGAGGGCCTAACGCGTGACGAGATGATGGCCCTCCCCACCGGCCCCAAGGAACGCACCGCCGATGAAATGCAGTTCAACCGCCTCGGCGGCGGTTTCTCCTCCTAcgaccgctccggcgctcgctcgcgcgaccgcgaccgcgacGGGGGCAACAACGAAGGTTCCTGGGGCGGGGGGAGAAGATCCTACGGCGGAGGATTCGACGAAGAACGCAGAGGTCCAAATCCTAGGGTTTCGGAACTCGATCAGCCGTCGCGGGCGGACGAGGTCGACAATTGGGCTTCGGTGAAGAAAACTCTCCCCTCGTTCGATTCAGGCCGCCAGAGTCGCTAcggtggcggaggcggtggcggtttcggcggcggtggcggtggaggaggcttcggtggtggtggtggTTTTGGTGCCGCGTCTAGGGCTGATGGAGTGGATAATTGGGCGGTTGGTAAGAAGCCTGTTGCTGCTAGATCTTCAAATTTTGGTTCCGGTTTTCGTGATTCCGGCGTGGAGCCTGATCGGTGGGCGAGAGGTGGTCCACCGCGTGAGATTGAGCGGATGGAGCGGCCGAGGCTGGTGTTGGATCCGCCCAGAGGGGATGGTTCGGTGAATGATGCTCCGGCGAAGACGAATAAGGGGAATCCGTTCGGCGCGGCGCGGCCAAGGGAGGAGGTGTTGGCTGAGAAGGGGTTGGATTGGAAGAAGATGGATTCGGAGATTGATGCTAAGAAGACGAGCAGGCCCACGAGTTCGCACTCTAGCAGGCCTTCCAGTGCTCAGTCCAATCGTTCTGAGGGTCCCGGGCTGCAGGGGACCGATGCTGCGCCGAAATCACGGCCCAAGGTGAATCCCTTTGGGGATGCCAAGCCTAGGGAGGTTCTGCTGGGCGAGCGAGGCATGGATTGGCGGAAGATTGATCTTGAATTGGAGCATCGCTCTGTTGACAGGCCTGAGACAATGGAGGAAAAATTATTAAAAGAAGAAATTGATAATTTGAAGAAGGAACTTGAGAAAGAATCCGCAATAAATTCAAACAAGGAATTTGCAGATGAGGCTGGTGGAGACCAAACCAGTACACATGCAATATTACAACAGAAAGAAAAGGAGCTGGAACAACTTATCCGTGATTTGGATGACAAAGTTCGTTTCGGGCAGAAAGCCGTTCAACAGCAGGAAAATCTTCTGCTCCTTCTGATAGGCCACCTTCCAGATCTGGCTCATTTGAGGATTCTAGAAGTGTGGATTTTACAGACAGACCTCGATCTCGTGGTACAGGAGATATGTGGATGCGTCCTAGTGATGACAGAAGACAGTTTCAAGGTAGCAGGGAAAGGGGATGGTTTTCTGGTAGCAGAGACTCGAATAGGTCAAATTCAAGAGAGAGATGGTGAACAGCAGTTTTGTGTGGATTAA 1611 0.4811 MSKPWGIGAWAADSERAEAEEREAQAAAAAAETQNFPSLKEAVNSKPKKKKGTTITLSEFNRGGFASEGLTRDEMMALPTGPKERTADEMQFNRLGGGFSSYDRSGARSRDRDRDGGNNEGSWGGGRRSYGGGFDEERRGPNPRVSELDQPSRADEVDNWASVKKTLPSFDSGRQSRYGGGGGGGFGGGGGGGGFGGGGGFGAASRADGVDNWAVGKKPVAARSSNFGSGFRDSGVEPDRWARGGPPREIERMERPRLVLDPPRGDGSVNDAPAKTNKGNPFGAARPREEVLAEKGLDWKKMDSEIDAKKTSRPTSSHSSRPSSAQSNRSEGPGLQGTDAAPKSRPKVNPFGDAKPREVLLGERGMDWRKIDLELEHRSVDRPETMEEKLLKEEIDNLKKELEKESAINSNKEFADEAGGDQTSTHAILQQKEKELEQLIRDLDDKVRFGQKAVQQQENLLLLLIGHLPDLAHLRILEVWILQTDLDLVVQEICGCVLVMTEDSFKVAGKGDGFLVAETRIGQIQERDGEQQFCVD 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02086 536 Coils Coil 12 34 - -
Cca09g02086 536 Coils Coil 426 449 - -
Cca09g02086 536 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B1 1 459 - -
Cca09g02086 536 MobiDBLite consensus disorder prediction 236 261 - -
Cca09g02086 536 MobiDBLite consensus disorder prediction 1 207 - -
Cca09g02086 536 MobiDBLite consensus disorder prediction 219 358 - -
Cca09g02086 536 MobiDBLite consensus disorder prediction 131 160 - -
Cca09g02086 536 MobiDBLite consensus disorder prediction 315 334 - -
Cca09g02086 536 Coils Coil 388 408 - -
Cca09g02086 536 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 459 IPR010433 GO:0003743
Cca09g02086 536 Pfam Plant specific eukaryotic initiation factor 4B 1 455 IPR010433 GO:0003743
Cca09g02086 536 MobiDBLite consensus disorder prediction 288 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02086 Cca-Chr9 45895590 45902137 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02086 1 456 Eukaryotic Initiation Factors Gene Family AT3G26400 56.250 9.96e-120 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02086 - - gmx:100784238 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02086 09 45895590 45902137 Cca09g02086 09 45895590 45902137 ECH