Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02085 ATGGGAGTCTTCACCTTTGTCCTCCGCAACTCCGGCGGCGAATGGACCGCCAAGCAGCATTCCGGCGACATCGAAGCCTCCGCTGACTCCACCTTCGATCTTCAACGGAAGCTCGTGCAAGCCGCCCTCGCCGTTGATTCCTCCGGCGCCGTTCAGTCCTCTTTCTCTCTCGTGTCCCCTTCCTCCGCTGTGTTCCAGGTGATAGTGGGTGGTGCAGTATTTGTTGGAGGTGGTGGTGCTGTTGCAGCTGCACCTGCGGGTGGTGCTGCCCCAGCTGGCGATGCTGCTCCGGCTGCTGAGAAAAAGGAAGAGAAGGTAGAGGAAGAGTCGGATGATGATATGGGATTGGGACTTTTTGATTAG 363 0.5785 MGVFTFVLRNSGGEWTAKQHSGDIEASADSTFDLQRKLVQAALAVDSSGAVQSSFSLVSPSSAVFQVIVGGAVFVGGGGAVAAAPAGGAAPAGDAAPAAEKKEEKVEEESDDDMGLGLFD 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02085 120 MobiDBLite consensus disorder prediction 106 120 - -
Cca09g02085 120 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED 1 120 - -
Cca09g02085 120 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED 1 120 IPR044252 GO:0003735|GO:0005840
Cca09g02085 120 MobiDBLite consensus disorder prediction 84 120 - -
Cca09g02085 120 Pfam 60s Acidic ribosomal protein 67 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02085 Cca-Chr9 45882527 45884135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02085 1 68 Cytoplasmic Ribosomal Protein Gene Family AT5G57290 77.941 7.30e-33 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02085 K02942 - gmx:100804776 141.354