Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02056 ATGAGTGATGAGAGGGGCGTTTCCGTCACTGTGCCTGCCTGCACCACCAAAAAGCTTCCCCAACCTCTGCACCAGCACACGCTCATTAGTGATTGCTCAGTAACCTCTGCCTGCCACGTCACAACACCACCCCTCCCCTCCTCACTCTCTCCGCACGTGCCAAACACTCACTTTGGAGACACTCAATTCCACATTTCGAAGCTCCATGAGCAGCGAGAGCCTCTGCAGCACCAGTTTCAGCCGTCTCTCCTTCGATCTCCTCCCGGCCTCGCCGGAGACTCTCTCCCTCAAGCCTCACCGCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCTCCGCCACCTTCCGCCGCAAGGCCGCGCTCACCTTCCGCGACTTCCACCTCCTCCGCAGCATCGGCGCCGGTGACATCGGCACCGTCTACCTATGCCGCCTCCGCAACGCCGACAACAACAACCAATTCTACAGCCGCGAAGAATCAGAAGACGACGCGTGCTGTTTGTACGCCATGAAGGTGGTGGACAAGGACGCAGTGGCATTGAAGAAGAAATCGCAGAgagcggaaatggagagaaaaatcctcaagatgctcgatcatccttttctccctacgctctacGCCGAGTTTGAAGCATCACATTTCTCTTGCATCGTCATGGAGTTTTGTTCCGGTGGAGACTTGCACACGCTGCGCTACAAGCATCCTCACAACCGTTTTCCTCTCTCCTCCGCAAGGTTTTATGCTGCGGAGGTGCTGGTGGCGTTGGAATACCTCCACATGCTTGGAATCATCTACAGAGATTTAAAGCCTGAGAACGTGTTGGTCAGATCAGACGGTCACATCATGCTTTCTGATTTTGATCTTTCGCTTTGCTCAGATGCGATCCCAGCCGTTGAATCCGCAGATTGCTTACCTTCTCCAACTGCATCATTGCCTTACACTCGCTCGCATTCTTTTATCACTCCATTCTCCTGTTTCTCGAACCGTGTCTTCCGGTCGCGCGAGGTTCGGGCGCTTGAGCCGAACCGGTTATTCGTTGCCGAACCGGTTTCCGCCCGGTCGTGCTCCTTTGTCGGAACTCACGAGTACGTCTCGCCGGAGGTTGCCTCCGGACGGTCGCACGGCAACGCCGTGGACTGGTGGTCGTTCGGAGTATTCATCTACGAACTCATATACGGTCGCACGCCGTACGCGGGCGCGTCGAAGGAGGCTACGCTGCGGAACATCGTGAAGAAACCCCTGGCATTCCCCACGGCCACGCCCTTGAGCGGTCTTGAAGTCCACGCGCGGGATTTGATATCCGGCTTGCTGCACAAGGACCCGGCGCGGCGGCTCGGCTCGAAGCGCGGCGCCGCTGACGTCAAGAAGCACCCGTTCTTCAAAGGGCTGAACCTGGCGCTGATTCGCATGCAGACGCCGCCCCAAGTGCCTGCCTCCAGAAGGACCAAAACGACGTCGCTGTACCCTGTGAAGGGTAACGGCAACGATATAAGACAACAGCAAACGACGCGGTCGTTTGATTTTTACTTTTAG 1611 0.5121 MSDERGVSVTVPACTTKKLPQPLHQHTLISDCSVTSACHVTTPPLPSSLSPHVPNTHFGDTQFHISKLHEQREPLQHQFQPSLLRSPPGLAGDSLPQASPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSATFRRKAALTFRDFHLLRSIGAGDIGTVYLCRLRNADNNNQFYSREESEDDACCLYAMKVVDKDAVALKKKSQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHTLRYKHPHNRFPLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDAIPAVESADCLPSPTASLPYTRSHSFITPFSCFSNRVFRSREVRALEPNRLFVAEPVSARSCSFVGTHEYVSPEVASGRSHGNAVDWWSFGVFIYELIYGRTPYAGASKEATLRNIVKKPLAFPTATPLSGLEVHARDLISGLLHKDPARRLGSKRGAADVKKHPFFKGLNLALIRMQTPPQVPASRRTKTTSLYPVKGNGNDIRQQQTTRSFDFYF 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02056 536 Coils Coil 101 101 - -
Cca09g02056 536 Gene3D Transferase(Phosphotransferase) domain 1 379 504 - -
Cca09g02056 536 MobiDBLite consensus disorder prediction 69 107 - -
Cca09g02056 536 Coils Coil 137 137 - -
Cca09g02056 536 Gene3D Phosphorylase Kinase; domain 1 150 247 - -
Cca09g02056 536 ProSiteProfiles Protein kinase domain profile. 152 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02056 536 Gene3D Transferase(Phosphotransferase) domain 1 248 315 - -
Cca09g02056 536 SMART serkin_6 152 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02056 536 SUPERFAMILY Protein kinase-like (PK-like) 142 508 IPR011009 -
Cca09g02056 536 Pfam Protein kinase domain 380 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02056 536 Pfam Protein kinase domain 152 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02056 536 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 138 536 - -
Cca09g02056 536 PANTHER FLIPPASE KINASE 1-RELATED 138 536 - -
Cca09g02056 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02056 Cca-Chr9 45690975 45692911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02056 142 535 AGC Kinase Gene Family AT2G34650 64.975 0.0 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Cca09g02056 Pkinase 3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02056 - - gmx:100815648 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02056 09 45690975 45692911 Cca09g02056 09 45690975 45692911 ECH