Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02051 ATGCAGAGCCAACTTGTGTGCAATGGTTGTAGGAGCCTTCTGCTTTACCCGAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACCATTACCTCTGTTCCTCCACCTGCAGGGATGGAAATGTCTCAACTTTATTGTGGAGGTTGTAGGACATTGCTAATGTACACACGTGGAGCTACAAGTGTGAGATGTTCCTGCTGTCACACTGTAAACCTTGTTCCAGCATCTAATCAAGTAGCTCATGTCCATTGTGGGAACTGCCGGACAACACTCATGTATCCCTATGGAGCTCCCTCAGTCAAATGTGCTCTTTGTCACTATATTACCAATGTCAGTATGAACAATGGAAGGCTTCCAATCCCTGTTCATAGACCTAATGGGACAACCAATGCTGGAACCTTGCCTTCTACTTCAACATCAATGCCCCAATCTCAAAGTCAAACAGTAGTGGTAGAAAATCCTATGTCTGTGGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGAGTTACAACAGATAAGAAATAA 534 0.4419 MQSQLVCNGCRSLLLYPRGATNVCCALCNTITSVPPPAGMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVPASNQVAHVHCGNCRTTLMYPYGAPSVKCALCHYITNVSMNNGRLPIPVHRPNGTTNAGTLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02051 177 Pfam LSD1 zinc finger 85 109 IPR005735 -
Cca09g02051 177 Pfam LSD1 zinc finger 47 71 IPR005735 -
Cca09g02051 177 Pfam LSD1 zinc finger 7 31 IPR005735 -
Cca09g02051 177 PANTHER PROTEIN LSD1 1 175 IPR040319 -
Cca09g02051 177 PANTHER LSD1-LIKE PROTEIN 1 175 - -
Cca09g02051 177 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 44 74 IPR005735 -
Cca09g02051 177 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Cca09g02051 177 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 82 111 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02051 Cca-Chr9 45610047 45616398 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Cca09g02051 zf-LSD1 8.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02051 - - gmx:100776394 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02051 09 45610047 45616398 Cca09g02051 09 45610047 45616398 ECH