Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02049 ATGAAACAGTTGAAATTGGCTGCAGAATCTCACGCCAAAGAGGACAATCCTCTTAGAAATAAGCCAGAAATGGAAAATGCACTTGAGTCTTCTGGCAGTCCACGACATAGAAAGATAGCAGCCAGATGGGATCCGCTTGGAGCATGTCGGCCTACAATTGATGAAGCACCTGTGTTTTATCCAACTATCGAGGAGTTTGAAGACACACTTGGCTACTTAGCTAAGATTCGCCCCCAAGCTGAACCTTATGGCATATGTAGAATCGTCCCTCCAGCTTGCTGGGTACCACCTTGCCCTCTTAAGGAGAAAGATTTATGGGAAAATGCAAAATTTCCCACTCGTATTCAGCAAGTTGACTTGCTTCAGAACAGGGAGCCCATGAAAAAGAAAATTAGGGGAAGGAAACGAAAACGTAGAAAGCAGTCAAAGATGGGCATGGGTAGGAGAACTGCCAAATCAGGTTCTGAAGCTAATGTTGCTTCTGAACCTGATGAGAAGTTTGGATTCCAATCAGGGTCAGCTTTCACACTTCAAGACTTTCAGCAATATGCTAATGTTTTTAAAAATTGCTATTTTGGATTGAATGGCACCAATGAACATGGAAAAGTTAGTTATAATAGTCACCAGCAGAGATGGGGGCCCTCTGTGGAGGAAATTGAAGGCGAATACTGGCGAATAATAGAGAAACCAACCGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACAGGAGCACTTGGAAGTGGTTTTCCTAAGACATCATCCTTAACTAAGAATGATTCAGATTTGTATGCTCTGTCTGGCTGGAATCTGAATAACTTCCCTCGATTGCCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGCATGTGGAGGACCATCATCTTTATTCACTTAATTATCTGCATTGGGGTGACCCAAAAGTATGGTATGGAGTACCTGGAAGCCATGCTCCAGGTTTGGAAGATGCGATGAGAAAGTACTTGCCTGATTTATTTGAAGAACAACCAAATCTACTCAATGAATTGGTGACTCAGTTATCTCCTTCAATTCTTAAATCTGAGGGGGTGCCTGTGCATCGCACTGTCCAGCATGTCGGGGAATTTGTTGTTACCTTTCCAAGGGCATACCACTGTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCTGTGAATGTGGCTCCTTTTGATTGGTTTGTGCATGGACAGAATGCTGCTGAGCTTTACAGTCTGCAGTGCCGTAAGACTTCTCTGTCTCATGACAAGTTATTATTTGGATGTGCTCAGGAAGCCGTGCATGCCCTCGCACAGCGAACTTTTCATGGAAAAGAAAATCCAAAATATATAAAATGGACAAGTGCTTGTGGGAAAGATGGAGTTCTTACCAAGGCAGTTAAGACAAGGATAACTATGGAAAAGGAGAGGCTTGACTGTCTTCCAACTCATTTAAAGATTCTGAAGATGGACAGTGAGTTTGATTCTTTTAAGGAAAGGGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCTGCTGTAGGTTGCAAGTGCTCTCCCGATAGTTATTCTTGTCTCAGGCATGCAAATTTGTTTTGCTCATGTGAAATGGGCAAAAAATTTGTTTTGGTTCGTTATACTATGAATGAACTAAGTACATTGGTTGAAGCATTAGAAGGAGAATCGCATGCTATTGAGATGTGGTCAAATAGAAACACTGGGATGGTTTATGCTACTGCCAAGGATGCTTGCATGTGTAAACAAGATATGGATAGTGCCATGTGCCAGACCCAGAGTTACAAAGAAGGGAAGAATTCAACTTATTGTGCAGGAACTAATGATAAGTCAAATTCAAATATACCAAGCAGTTCTGGCAGTCACATTTCTGCAGAGTTAGTCCACTCAGAGTTTCACTATGAAACTTTAAGTGCACCATATGACACTAAAAATTGTCATAAAGATAATTTAAATAAAAAAATCTTGGTCATGGGCAATGAAGTTAAGGTGGAGAAGGGAGGTTCTGTGGATTTGAATATTGATGTTATATCTGGCGAGCCTGGAAATGATTTTCTGCATGCTGCTGATTACCATCATAATAAGGGTGTTCCACAAGTGGAAAAAGTCTTCTATGCAGAAACCAGAAAGGAACAAGACAACATGGAACCTGGTGCTGGTTGTATTGCATCCTTGGAGAAAGAATCATGTTCAAGGGATGGTCAAAATTCTTGTACACTTGATGGTTATAAATTGTTTGGGGTGGATCTGCAGAGGCATTCTGATTATGGAGAGAAACTCAACAATGTACTTAAGATGCACAATGTCGAAAACTCCAATACAAGTATATCTTTGACAAACCAAAGCTTCTTAATGCAGAAGTTTGATATTGTTGTTGAGCCTGTAAATTTCGGCTCTGTTATGTTTGGAAAGCTGTGGTGCAGTAAGCATGCAATATATCCAAAAGGATACAAAAGTCGTGTTAAGTTCTTCAGCATTCTTGATCCACCAAGAATTTGTAACTATCTTTCTGAAGTTTTCGATGCTGGATTTCTTGGGCCTCTTTTCAAGGTTACCATGGAAGAACATCCAAGTCAGGCTTTCACAAACACCTCAGCAGATAATTGTTGGGAAACAGTTTTCGACAAACTAAATCATGAAATTAAGAGACGAAGGAGTAGAGGTGAAATGGAACTTCCTCCCTTGGAACTTCTGCAGAGCATTACTGGTCATAAAATGTTTGGATTTCTTTCACCTTCCATTGTTCAGACCATTGAAGCTCAGGATCCCAATCATCAATGCGTCGAATACTGGAATCACAAAGAAGTTGTCTCTGAATCTTCAAACAGTGCCATTGATAACTGTAAGTTCAGTCCTAGTTCAAGTAACTCTCTAAGTGATGTCAAGACGAAATTATTTGGCGTGGGTTTGATAAAGCATGAACAAGATAACATCAGAGAAAGTTGTGATTCATTTGAAGAGATGAAATTGGTGTTACAAGGATTCTTGAAAAAGGCAAGTCCTGTTGAATTAAGTGTCATGCATAAGTTATTCAGCTCTGATGCACAGTTCACTGAGTGGAGAGCGACAATTATAACGATGGTGGAGGAAATCCAGAAAGCTTGTCCATAA 3180 0.4069 MKQLKLAAESHAKEDNPLRNKPEMENALESSGSPRHRKIAARWDPLGACRPTIDEAPVFYPTIEEFEDTLGYLAKIRPQAEPYGICRIVPPACWVPPCPLKEKDLWENAKFPTRIQQVDLLQNREPMKKKIRGRKRKRRKQSKMGMGRRTAKSGSEANVASEPDEKFGFQSGSAFTLQDFQQYANVFKNCYFGLNGTNEHGKVSYNSHQQRWGPSVEEIEGEYWRIIEKPTDEVEVYYGADLETGALGSGFPKTSSLTKNDSDLYALSGWNLNNFPRLPGSALCFEGSDISGVVVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHAPGLEDAMRKYLPDLFEEQPNLLNELVTQLSPSILKSEGVPVHRTVQHVGEFVVTFPRAYHCGFNCGFNCAEAVNVAPFDWFVHGQNAAELYSLQCRKTSLSHDKLLFGCAQEAVHALAQRTFHGKENPKYIKWTSACGKDGVLTKAVKTRITMEKERLDCLPTHLKILKMDSEFDSFKERECFSCFYDLHLSAVGCKCSPDSYSCLRHANLFCSCEMGKKFVLVRYTMNELSTLVEALEGESHAIEMWSNRNTGMVYATAKDACMCKQDMDSAMCQTQSYKEGKNSTYCAGTNDKSNSNIPSSSGSHISAELVHSEFHYETLSAPYDTKNCHKDNLNKKILVMGNEVKVEKGGSVDLNIDVISGEPGNDFLHAADYHHNKGVPQVEKVFYAETRKEQDNMEPGAGCIASLEKESCSRDGQNSCTLDGYKLFGVDLQRHSDYGEKLNNVLKMHNVENSNTSISLTNQSFLMQKFDIVVEPVNFGSVMFGKLWCSKHAIYPKGYKSRVKFFSILDPPRICNYLSEVFDAGFLGPLFKVTMEEHPSQAFTNTSADNCWETVFDKLNHEIKRRRSRGEMELPPLELLQSITGHKMFGFLSPSIVQTIEAQDPNHQCVEYWNHKEVVSESSNSAIDNCKFSPSSSNSLSDVKTKLFGVGLIKHEQDNIRESCDSFEEMKLVLQGFLKKASPVELSVMHKLFSSDAQFTEWRATIITMVEEIQKACP 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02049 1059 Pfam F/Y-rich N-terminus 819 862 IPR003888 GO:0005634
Cca09g02049 1059 Gene3D - 815 951 - -
Cca09g02049 1059 ProSiteProfiles FYR domain FYRN motif profile. 807 865 IPR003888 GO:0005634
Cca09g02049 1059 SUPERFAMILY Clavaminate synthase-like 270 451 - -
Cca09g02049 1059 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 1057 - -
Cca09g02049 1059 SMART JmjN_1 55 96 IPR003349 -
Cca09g02049 1059 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Cca09g02049 1059 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 10 1057 - -
Cca09g02049 1059 SMART fyrc_3 871 965 IPR003889 GO:0005634
Cca09g02049 1059 SMART fyrn_3 821 865 IPR003888 GO:0005634
Cca09g02049 1059 ProSiteProfiles FYR domain FYRC motif profile. 867 957 IPR003889 GO:0005634
Cca09g02049 1059 MobiDBLite consensus disorder prediction 127 163 - -
Cca09g02049 1059 SMART cupin_9 264 430 IPR003347 -
Cca09g02049 1059 Gene3D Cupin 41 414 - -
Cca09g02049 1059 MobiDBLite consensus disorder prediction 1 36 - -
Cca09g02049 1059 Pfam F/Y rich C-terminus 869 956 IPR003889 GO:0005634
Cca09g02049 1059 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Cca09g02049 1059 MobiDBLite consensus disorder prediction 1 22 - -
Cca09g02049 1059 Pfam jmjN domain 57 90 IPR003349 -
Cca09g02049 1059 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Cca09g02049 1059 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Cca09g02049 1059 MobiDBLite consensus disorder prediction 128 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02049 Cca-Chr9 45590649 45598867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02049 734 994 JUMONJI Transcription Factor Family AT1G30810 41.509 2.60e-52 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Cca09g02049 JmjC 6.8e-44 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02049 - - gmx:100784581 1863.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02049 09 45590649 45598867 Cca09g02049 09 45590649 45598867 ECH