Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02046 ATGGCTTTGTGTTCTCAAATACTTGTTCATTTTGCCTCATTACTCATCCTCCTCTCTCTTCAGCTACACAACCTTTTCATTGGTGTATCATCAGCCACTTTAAGCATAACCACAGACACTGAAGCATTGATCTCATTCAAGTCTCAACTCAGTAATGACACTCTCAACACCTTATCTTCTTGGAACCATAACTCTTCCCCTTGCAATTGGACTGGTGTCCTGTGTGACAGGCTTGGCCAAAGAGTAACAGACCTGGACCTTTCAGGCTTGGGCCTCTCAGGCCACCTAAGCCCTTATATTGGCAACCTCTCCTCTCTTCAAACACTTCAGTTGCAGAATAACCAACTCACTGGAGTGATTCCTGACCAAATTGGCAACCTATTAAGCCTGAGAGTTCTAAACTTGAGCTCTAACATGTTTGAAGGAAAGCTTCCTTCAAACATCTCCCACTTGATTGACCTCCAGCTTCTTGATTTATCATCAAACAGGATTCTCAGCATGATTCCTGATGACATCAGCTCCTTGAAAAAGCTTGAGGTTTTGAAACTGGGAAGGAATAGTCTCTATGGTGCAATTCCTGCATCTTTAGGAAACATTTCTTCTCTCAAAAATATCAGCTTTGGCACCAACTCTCTCACTGGCTGGATCCCCAGTGACTTGGGTAGGCTCCATGATTTGATTGAGCTTGATCTCACTCTCAATAATCTCAATGGGACTGTTCCACCTTCTATATATAACTTATCTTCTCTTGTTAACTTTGCCTTAGCTTCAAACTCTTTTTGGGGTGAGATTCCTCAGGACGTTGGTCACAAACTTCCAAAACTCCTGGTGTTCAATTTCTGCTTCAATAAATTCACAGGTAGAATTCCAGGGTCATTGCACAACCTCACCAACATTCGGGTCATTCGTATGGCATCCAACCATTTGGAAGGAACAGTGCCACCTGGTTTGGGAAATCTCCCATTTCTTCGCATGTATAATATTGGCTATAACAGGATAGTGAGTTCAGGTGTGAGAGGTCTAGACTTCATTACTTCTTTGACCAACAGCACTAAACTGAACTTTCTGGCAATTGATGGTAATATGCTTGAAGGTGTGATTCCTGAAACCATTGGAAATCTTTCTAAGGATCTCTCAAAATTGTACATGGGAGAGAATCGTTTCAATGGGAGCATACCATCCTCCATTGGTCGTCTTAGTGGCTTGAGTTTGTTAAACTTGAGCTACAATTCAATCTCTGGAGAAATTCCACAGGAGTTAGGCCAGTTGGAGGAACTACAAGAGCTATCTCTTGCTGGAAATAAGATATCAGGAGGTATTCCAAACATACTTGGTAATCTCCTGAAGTTAAACCAGATTGATTTGTCAAGAAACAACCTTGTGGGAACAATACCTATCAGTTTTGAAAATTTGCAAAACCTACTCTACATGGACCTATCCAGCAACAAACTCAATGGCAGCATACCAATGGAAATCCTCAATCTTCCAACTTTGAGCAATGTTTTGAACTTGTCGATGAACTTTTTGAGTGGGCCAATACCTCAAGTTGGGAGAATGAGTAGTGTTGCCACCATTGACTTTTCTAGCAATCAATTGTATGGTGGCATCCCCAGCTCAATCAGCAATTGTCTCAGCTTAGAAAAATTGTTTTTGGCAAGGAATCAGCTCTCAGGTCCCATTCCAAAGAGTCTTGGAGATTtgagaggcttggaaactttggacctgtcctccaaccaactctctggaaccattcctactgaacttcaaaatctacaggttcttaagctcttaaacctatcatacaatgatctagaaggatccattcctagtggtggagttttccaaaatctatctgctgtccatttagaaggcaatagaaatctctgcTTGCATTCCCCATGCAAAACTCATGGCCAAGGAACAAGAAATGTAAGACTTTACGTTATCATAGCCATTGTGGTAACAGTGATACTATGTCTCACAATTGGCTTAATACTATATATAAGGAACAAAAAGGTGAAGGTAGCAGCAGCAGTATCTGAACAGCTGAAACCTCAAGCACCAATGATCTCTTATGATGAGCTTCGTGTGGCGACCGAGGAGTTCAGCCAGGAAaacttaataggagttggtagctttggctcagtttataaaggccatctaagtcatggaactaatgttgcagtgaaagttcttgacaccctaagaactggctctttaaagagtttctttgcagaatgtgagaccatgaagaactcaaggcatagaaatctggttaagctgatcacatcatgctctagtgctgactttaaaaacaatgattttctggctctggtgtatgagtacctttgtaatggtagcttggaagattggatcaaggggaggaggaagcatgcaaacggcaatgggttgaaccttatggagaggctgaacatagctattgatgttgcttgtgcattggattacctgcacaatgatagtgaaatcccagttgtgcactgtgatttgaagcctagcaacattctattgggtgaggacatgacagcaaaagttggggactttggattagctaggttgctaattcaaagctcaactaatcaagtttccattagctccactcatgtccttaggggctcgatcggttacatacctccagAATATGGATGGGGAGAGAAAGCATCTGCAGCTGGTGATGTATATAGTTTTGGTATAGTGTTACTAGAGCTCTTCTCTGGTAAAAGCCCAACAGATGAGGGTTTCACAGGAGGTCTAAGCATAAGAAAATGGGTGCAATCAGGAGTGAAAGACAAGACAGTGCAAGTGATCGACCCTCAGTTGCTGTCCCTCATTTTCCATGATTACCCTTCTGAGGAACCAAATGTAGAAATGTATTGTGTGGATGCAATTGTAGGAGTTGCCATATCTTGCACTGAAGGCAATCCAGATGAACGCATTGGCATTAGAGATGCAGTTCGTCAACTAAAAGCTGCCAGAGACTCTCTTCTGAATCAGTCTCAGGAGAGTCCTAGGGATACCAAGTCTTACTAA 3048 0.3202 MALCSQILVHFASLLILLSLQLHNLFIGVSSATLSITTDTEALISFKSQLSNDTLNTLSSWNHNSSPCNWTGVLCDRLGQRVTDLDLSGLGLSGHLSPYIGNLSSLQTLQLQNNQLTGVIPDQIGNLLSLRVLNLSSNMFEGKLPSNISHLIDLQLLDLSSNRILSMIPDDISSLKKLEVLKLGRNSLYGAIPASLGNISSLKNISFGTNSLTGWIPSDLGRLHDLIELDLTLNNLNGTVPPSIYNLSSLVNFALASNSFWGEIPQDVGHKLPKLLVFNFCFNKFTGRIPGSLHNLTNIRVIRMASNHLEGTVPPGLGNLPFLRMYNIGYNRIVSSGVRGLDFITSLTNSTKLNFLAIDGNMLEGVIPETIGNLSKDLSKLYMGENRFNGSIPSSIGRLSGLSLLNLSYNSISGEIPQELGQLEELQELSLAGNKISGGIPNILGNLLKLNQIDLSRNNLVGTIPISFENLQNLLYMDLSSNKLNGSIPMEILNLPTLSNVLNLSMNFLSGPIPQVGRMSSVATIDFSSNQLYGGIPSSISNCLSLEKLFLARNQLSGPIPKSLGDLRGLETLDLSSNQLSGTIPTELQNLQVLKLLNLSYNDLEGSIPSGGVFQNLSAVHLEGNRNLCLHSPCKTHGQGTRNVRLYVIIAIVVTVILCLTIGLILYIRNKKVKVAAAVSEQLKPQAPMISYDELRVATEEFSQENLIGVGSFGSVYKGHLSHGTNVAVKVLDTLRTGSLKSFFAECETMKNSRHRNLVKLITSCSSADFKNNDFLALVYEYLCNGSLEDWIKGRRKHANGNGLNLMERLNIAIDVACALDYLHNDSEIPVVHCDLKPSNILLGEDMTAKVGDFGLARLLIQSSTNQVSISSTHVLRGSIGYIPPEYGWGEKASAAGDVYSFGIVLLELFSGKSPTDEGFTGGLSIRKWVQSGVKDKTVQVIDPQLLSLIFHDYPSEEPNVEMYCVDAIVGVAISCTEGNPDERIGIRDAVRQLKAARDSLLNQSQESPRDTKSY 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02046 1015 SMART LRR_sd22_2 447 473 - -
Cca09g02046 1015 SMART LRR_sd22_2 175 207 - -
Cca09g02046 1015 SMART LRR_sd22_2 151 172 - -
Cca09g02046 1015 SMART LRR_sd22_2 423 442 - -
Cca09g02046 1015 SMART LRR_sd22_2 223 249 - -
Cca09g02046 1015 SMART LRR_sd22_2 567 593 - -
Cca09g02046 1015 SMART LRR_typ_2 296 320 IPR003591 -
Cca09g02046 1015 SMART LRR_typ_2 103 126 IPR003591 -
Cca09g02046 1015 SMART LRR_typ_2 151 175 IPR003591 -
Cca09g02046 1015 SMART LRR_typ_2 591 616 IPR003591 -
Cca09g02046 1015 SMART LRR_typ_2 471 495 IPR003591 -
Cca09g02046 1015 SMART LRR_typ_2 399 423 IPR003591 -
Cca09g02046 1015 SMART LRR_typ_2 127 150 IPR003591 -
Cca09g02046 1015 SMART LRR_typ_2 223 247 IPR003591 -
Cca09g02046 1015 SMART LRR_typ_2 567 590 IPR003591 -
Cca09g02046 1015 Gene3D Ribonuclease Inhibitor 340 638 IPR032675 -
Cca09g02046 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672|GO:0006468
Cca09g02046 1015 SUPERFAMILY L domain-like 37 333 - -
Cca09g02046 1015 Pfam Protein tyrosine and serine/threonine kinase 705 994 IPR001245 GO:0004672|GO:0006468
Cca09g02046 1015 SUPERFAMILY Protein kinase-like (PK-like) 684 994 IPR011009 -
Cca09g02046 1015 PANTHER OS04G0122200 PROTEIN 25 1001 - -
Cca09g02046 1015 Coils Coil 987 1007 - -
Cca09g02046 1015 SMART serkin_6 702 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02046 1015 ProSitePatterns Protein kinases ATP-binding region signature. 708 730 IPR017441 GO:0005524
Cca09g02046 1015 Gene3D Ribonuclease Inhibitor 237 339 IPR032675 -
Cca09g02046 1015 Gene3D Transferase(Phosphotransferase) domain 1 783 1014 - -
Cca09g02046 1015 ProSiteProfiles Protein kinase domain profile. 702 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02046 1015 PRINTS Leucine-rich repeat signature 474 487 - -
Cca09g02046 1015 PRINTS Leucine-rich repeat signature 567 580 - -
Cca09g02046 1015 ProSiteProfiles Leucine-rich repeat profile. 569 592 IPR001611 GO:0005515
Cca09g02046 1015 SUPERFAMILY RNI-like 228 611 - -
Cca09g02046 1015 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 25 1001 - -
Cca09g02046 1015 CDD STKc_IRAK 708 995 - -
Cca09g02046 1015 Gene3D Phosphorylase Kinase; domain 1 673 782 - -
Cca09g02046 1015 Gene3D Ribonuclease Inhibitor 34 236 IPR032675 -
Cca09g02046 1015 Pfam Leucine rich repeat 545 604 IPR001611 GO:0005515
Cca09g02046 1015 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515
Cca09g02046 1015 Pfam Leucine rich repeat 378 436 IPR001611 GO:0005515
Cca09g02046 1015 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02046 Cca-Chr9 45539833 45543338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02046 38 1010 Receptor kinase-like Gene Family AT3G47570 41.241 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Cca09g02046 PK_Tyr_Ser-Thr 6.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02046 - - gmx:102664710 1669.44