Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02040 ATGAACGATAAGAAAAGGCACGAGCATTGTGCAAGCCATGTGGATCGAGATGCAGAAAATGGAAAAGCCATCCTTATGAGCTATCTTCCCAACCATCTTCAACCAAAGCATCTTGATAATCTTAAAAATCTGAAGGGTAGAAAAAATCTCCTTGTTTCATGCTATACTACAGGTGGGAAAAATCCATGTTTATGGAGTACTAAGATCCCTAGAAGGAAACGTTCACGAGTGCTGTACAAGAAGAAGATATCACCAATGAAGAAGTTTCGAAAACAACTTCTCGAATTGTGGAAAAAATACGGGAACCTAGATGAGTCATCCCAGGAAGAGATCTTGTTGTTCAATAACGTAAATAACTTCATACCTAGTTATGAAATAGGCCTTGGAGAAAGGAAGAAAAAAAGAGGGGAAGAAGCTAGTGTTGTGAAAAAGGCTCACAAGGATAAACAGCCAGAAAGGAATTTTACGGATATGGAGAAAAGGCATGGTCCATGCTTCCATTGCGGAATTAATTTTACTCCACTTTGGCGTAATGGACCAGAAGAGAAGCCAGTGTTGTGCAATGCATGTGGATCAAGATACAGGAAAAGGGGTAACCTTGAGGATTATCTTCCCACTCATTTTCAACCAGAGTACCTTGATAACCTTAAAAAACTCAAAGGTTGGGAAAATCCATATTTTTGGAGTCATAAGATCCCTTCAAGGAGACGTTCACAGGTTGTGTGCAAGAACATAACACCAATGAAGAGGTTTGGAAAACAACTTCACAAGATGTGGAAACGTTATGGGAACCTAGATGAGTCATCCCCAGAAGAGGTCTTGCTTCTCAATAACGTAAATAACTTCATACCTAGTAATGAAATAGGCCTTGGAGGTGTTCTTCTTAAACCAGATGATACTTCTGCTTCTGCATAG 915 0.3967 MNDKKRHEHCASHVDRDAENGKAILMSYLPNHLQPKHLDNLKNLKGRKNLLVSCYTTGGKNPCLWSTKIPRRKRSRVLYKKKISPMKKFRKQLLELWKKYGNLDESSQEEILLFNNVNNFIPSYEIGLGERKKKRGEEASVVKKAHKDKQPERNFTDMEKRHGPCFHCGINFTPLWRNGPEEKPVLCNACGSRYRKRGNLEDYLPTHFQPEYLDNLKKLKGWENPYFWSHKIPSRRRSQVVCKNITPMKRFGKQLHKMWKRYGNLDESSPEEVLLLNNVNNFIPSNEIGLGGVLLKPDDTSASA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02040 304 Gene3D - 155 220 IPR013088 GO:0006355|GO:0008270
Cca09g02040 304 ProSitePatterns GATA-type zinc finger domain. 165 190 IPR000679 GO:0006355|GO:0043565
Cca09g02040 304 PANTHER OSJNBB0038F03.10 PROTEIN 171 302 IPR044589 -
Cca09g02040 304 ProSiteProfiles GATA-type zinc finger domain profile. 165 198 IPR000679 GO:0006355|GO:0043565
Cca09g02040 304 Pfam GATA zinc finger 165 199 IPR000679 GO:0006355|GO:0043565
Cca09g02040 304 PANTHER OSJNBB0038F03.10 PROTEIN 23 132 IPR044589 -
Cca09g02040 304 PANTHER GATA ZINC FINGER PROTEIN 171 302 - -
Cca09g02040 304 PANTHER GATA ZINC FINGER PROTEIN 23 132 - -
Cca09g02040 304 CDD ZnF_GATA 164 198 IPR000679 GO:0006355|GO:0043565
Cca09g02040 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 163 202 - -
Cca09g02040 304 SMART GATA_3 159 218 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02040 Cca-Chr9 45464632 45490554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02040 161 269 C2C2-Gata Transcription Factor Family AT5G47140 42.478 5.49e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca09g02040 GATA 4.4e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02040 - - ccaj:109790008 262.692