Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02031 ATGTCATCCTTCacctacgacgtgttcctcagcttcagaggctccgatacacgctacgctttcaccggcaacctctacaaagctcttcgtgacagaggaatccacaccttcatcgacgaagaggaccttcaacgagggcacgaaatcaaaccatcgctcatcaatgctattcaacactccaggatggccatccttgtcctctcccaaaactatgcgtcttcctcccactgcttggacgaacttgtcacaatcattgactctgttaaggccaagggtcgcttcattctgcccattttttatgacgttgatccttctcacgtgcgccatcagaccgggacttatggggaggcactcgccatgcaccaggaaaggttcacacgtgacaaggagaaccggaaggataacgtggacaggttgcacaaatggaagatggctcttaaccaagcagctagtttgtccggcAACCATTACAAACTTGGGAATGAATATGAACATGagtttattgggaagatagttaaagaggtctctgacaagattaaccgcacgccattacatgtggcggattaccccgttggactggattctcgagtgcaaaaagtgaagtcgcttttggaatttggatctgatattggagtccatgctgtagggatttatggaatagggggaatgggcaaaacaacacttgctcgagcaatttataattcaattgcggaccaatttgaaggtttatgttttcttgacaatgtgagagaaaacacaattaaacacggattagtacatctccaagagatgcttctgtctgaagtagttggagacaaggatattaagataggaagtgttagtagaggaatttcaataataaagcataggctccagcgaaagaaggtttttataattcttgatgatgtcgacaagctagaacaattgcgagcaactgttggagggcctaattggtttggttctggcagtagagtcatcataactactcgggacaaacatttgttagcaagttatggggttgatagaatatatgaggtgcgcggtctagatgaggaagaagcacttgaattgcttagttggaacgcttttaaagatgacaaagttgatccaagatacaaggacatttctaaccaagcagtagcttatgcttctggccttccactggctttggaagtagtaggttccctcttgtttgggaaaagcgtaaaagaatgggaatctgcattagatcagtataaaaaaattcctcacaagagtatccaagatatactcaaagtaagctacaatgctttagaggaagatcagaagaaaatttttcttgacattgcttgttgtttgaaaggacctgaagtggcagaggttgaagaaatactttgtgctcattatggtgtttgcatgaaatatggcattggagtgttggttgataaatccctcataaaaattaagaatggctgtgtgacacttcatgaattgatagaggttatgggtaaagaaattgatcgaaaagaatcaccgaaagagcttgggaaacgcaagaggttgtggttccatgaagatataattcaagttttagcagaaaatataGGGACTAGTGTGGTTGAAATCATATGCCTGGATTTCCCTTTATTTGAAGGAGATGAAATGTTCATAGAATGGAATGGAGAGGCCTTCAAGAAGATGGAAAACCTCAAAACATTAATTATTAGAAACTGTCATTTTTCAAAAGGCCCCAAACATCTTCCAAACAGTTTAAGAGTATTGGAATGGTGGGCATATCCATTACAGGATTTGCCAACTGATTTTTATCCAAACAAACTTGCCATATGCAAATTACCCAAGAGTTGCTTTACATCACTTGAGTTAGTTAGCTTATCGAAGAAGTTCTTGAATCTGATAGTTTTAAATTTTGACGAGACCGAATGTTTAACACAAATACCTGACATATCCGGTCTCCGGAATTTAGTAAAATTGTCATTTGAATGTTGTGAGAATTTAGTTTCAATTCATGATTCGGTTGGATTTCTTGATAAGCTTAGAATCTTGAGTGCTTTTGGTTGCAGCAAGCTTACAAGTTTTCCGCCCATCAAGTTGACCTCTCTTGAACAACTTGAACTTTCATCTTGCTCAAGTCTTGAAAGTTTTCCAGAGATATTGGGAAGGATGGAAAACATAACACAGCTTGAGTTGAAGTACACTCCTATAAAGGAATTCCCATTTTCATTTAGAAATCTTACTGGACTTCGAGATTTAGTGCTGGTTGGCTGTGGAAATGTTCAGTTACCAAGTAGCATTGTCATGTTGCCAGAACTGGCTGAGATTTTCGCTTTGGAATGCAAAGGGTGGATATTGCCAAAAGAAGATAAAGAAAAAGTGAGCTCAATATATTCAAATGTAAAATGTCTCTGTCTCACAGGCTGCAATCTATCAGATGAATATTTTCCCATGGCTTTAGCATTGTTTGGTAATGTGAAAGAGTTAGAGCTATCCAGCAATAACTTCACATTTCTTCCTGAATGCATCAAAGAATGTCGCTCTTTAACATTACTTAATTTGGATAATTGTGAGCGTCTTCGAGAAATTAGAGGGATTCCACCAAATTTAGAACATTTCTCAGGGGCAAATTGCAAGTCCTTGAGTTTCTGGTGTACTGCCATGTTGTTGAATCAGGAACTGCATGAGGCTGGAAACACCATGTTTTGTTTTCCTGGATCAAGGATTCCAGATTGGTTCGAGCACCAAAGCATAGGACCCTCAATATCTTTCTGGTTCCGTGACAAGTTCCCTACCATGGCTCTTTGTTTTGTTATTGGACCAATGGGTAAGGACTCTATTTTGTTTAGACCCATCATGACCATAAATGGGGTGGAGATACAATTCTTGACTGAAAAAAGAATTTGTTTCGACTTCCCATCTTTAACTGATCACGTATTTATCATTGGTACAAAATACACGAGCTTCGGAGATAATCTGGATGAAGTACTTTCGAAAAATGAATGGAATCATGTGGTTGTTTCCATTGGTATTGGTTTTGAACCAACCCCTGAGAAGATGATGATTGTCAAGCGAACTGGATTCCACATAATCAAACCAGAAAGCAGCACGGGCGATATTGAATTCACCGATCCTTATAATAACCATCCAATTCCAAGCTTGGAAGAGAAGCATAAATTGTTGGACATAGGAGATTGTCATAAACAATTTATACAGCAGCAAACCACTTTGGTTTCATTGGAACCACATGTGGGACAGGGCAGGGAGTCATTTTCATTACTTCATCCTCAAGCATGCCAAAATAATGTGATTTCGGATTCGAATTCAACACGAATAAGTAGCATCGCCGGTATCCAAGGGCATGAAATTGCAGCAGGAAATTTACAGTTGGACATGGGAGTTTTGCAATTTGTGCAGAAGCGAAAAAGATTGGCTATTATGGGTTTATTGCAACAACGGCGCATGGCTTCATTGGGTTTACTGCAACGACGGGGCAGAGAATGTCTTTCATTGCTTTGTCCTCCATCATTGGATTACATGAACGATAATCTGTATTGGGATTCAAAGTCGCAGAGGAATAGCATCGTTAGTGTCCAAGGCAGGACACACACACACCAACACCAACCTGAACCTGAACCTGTGTCCATCTCGATTACAGCATGGGCTTCCCACTAA 3666 0.2278 MSSFTYDVFLSFRGSDTRYAFTGNLYKALRDRGIHTFIDEEDLQRGHEIKPSLINAIQHSRMAILVLSQNYASSSHCLDELVTIIDSVKAKGRFILPIFYDVDPSHVRHQTGTYGEALAMHQERFTRDKENRKDNVDRLHKWKMALNQAASLSGNHYKLGNEYEHEFIGKIVKEVSDKINRTPLHVADYPVGLDSRVQKVKSLLEFGSDIGVHAVGIYGIGGMGKTTLARAIYNSIADQFEGLCFLDNVRENTIKHGLVHLQEMLLSEVVGDKDIKIGSVSRGISIIKHRLQRKKVFIILDDVDKLEQLRATVGGPNWFGSGSRVIITTRDKHLLASYGVDRIYEVRGLDEEEALELLSWNAFKDDKVDPRYKDISNQAVAYASGLPLALEVVGSLLFGKSVKEWESALDQYKKIPHKSIQDILKVSYNALEEDQKKIFLDIACCLKGPEVAEVEEILCAHYGVCMKYGIGVLVDKSLIKIKNGCVTLHELIEVMGKEIDRKESPKELGKRKRLWFHEDIIQVLAENIGTSVVEIICLDFPLFEGDEMFIEWNGEAFKKMENLKTLIIRNCHFSKGPKHLPNSLRVLEWWAYPLQDLPTDFYPNKLAICKLPKSCFTSLELVSLSKKFLNLIVLNFDETECLTQIPDISGLRNLVKLSFECCENLVSIHDSVGFLDKLRILSAFGCSKLTSFPPIKLTSLEQLELSSCSSLESFPEILGRMENITQLELKYTPIKEFPFSFRNLTGLRDLVLVGCGNVQLPSSIVMLPELAEIFALECKGWILPKEDKEKVSSIYSNVKCLCLTGCNLSDEYFPMALALFGNVKELELSSNNFTFLPECIKECRSLTLLNLDNCERLREIRGIPPNLEHFSGANCKSLSFWCTAMLLNQELHEAGNTMFCFPGSRIPDWFEHQSIGPSISFWFRDKFPTMALCFVIGPMGKDSILFRPIMTINGVEIQFLTEKRICFDFPSLTDHVFIIGTKYTSFGDNLDEVLSKNEWNHVVVSIGIGFEPTPEKMMIVKRTGFHIIKPESSTGDIEFTDPYNNHPIPSLEEKHKLLDIGDCHKQFIQQQTTLVSLEPHVGQGRESFSLLHPQACQNNVISDSNSTRISSIAGIQGHEIAAGNLQLDMGVLQFVQKRKRLAIMGLLQQRRMASLGLLQRRGRECLSLLCPPSLDYMNDNLYWDSKSQRNSIVSVQGRTHTHQHQPEPEPVSISITAWASH 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02031 1221 Gene3D Ribonuclease Inhibitor 546 695 IPR032675 -
Cca09g02031 1221 Pfam C-JID domain 901 1028 IPR045344 -
Cca09g02031 1221 SUPERFAMILY "Winged helix" DNA-binding domain 419 524 IPR036390 -
Cca09g02031 1221 Gene3D - 178 341 IPR027417 -
Cca09g02031 1221 CDD AAA 191 306 - -
Cca09g02031 1221 PANTHER ARCHAEAL ATPASE 17 1006 - -
Cca09g02031 1221 SUPERFAMILY L domain-like 546 900 - -
Cca09g02031 1221 Gene3D - 348 432 IPR042197 -
Cca09g02031 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 442 IPR027417 -
Cca09g02031 1221 SMART till_3 5 152 IPR000157 GO:0007165
Cca09g02031 1221 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 154 IPR035897 -
Cca09g02031 1221 Pfam NB-ARC domain 196 431 IPR002182 GO:0043531
Cca09g02031 1221 PRINTS Disease resistance protein signature 383 397 - -
Cca09g02031 1221 PRINTS Disease resistance protein signature 695 711 - -
Cca09g02031 1221 PRINTS Disease resistance protein signature 290 304 - -
Cca09g02031 1221 PRINTS Disease resistance protein signature 214 229 - -
Cca09g02031 1221 Gene3D Ribonuclease Inhibitor 783 898 IPR032675 -
Cca09g02031 1221 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 1006 IPR044974 GO:0006952
Cca09g02031 1221 ProSiteProfiles TIR domain profile. 4 179 IPR000157 GO:0007165
Cca09g02031 1221 Pfam TIR domain 6 182 IPR000157 GO:0007165
Cca09g02031 1221 SMART AAA_5 211 349 IPR003593 -
Cca09g02031 1221 Gene3D - 5 177 IPR035897 -
Cca09g02031 1221 Gene3D Ribonuclease Inhibitor 696 782 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02031 Cca-Chr9 45392806 45398034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02031 2 840 WRKY Transcription Factor Family AT4G12020 30.289 1.89e-82 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02031 - - gmx:100814962 1906.34