Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02025 ATGGAGTCCATTCTCGTGCTTCTTCTGATCTTTGTGGCAGTTTCAGCAGCACCCTCTCCCTCTCCTTCTGCCACCATTTCCCCTACCAACAATTCGACATGCCCAGTGGCAATGAATTATGTGCAAACAGTCCCTTGGAACATCTCTGCCTGCCATAACTTCCAACCCTTGTCATTCCAAAACCAAACACTCACAACCCCGTGTTGCCAAACTCTCCTATCCCTCTTTGGCATAGCACTTGCAAAAAACCTCAAAAAGCACTCTCTTTTCCAACTCCCCAACCTGCCCACCTCCATATCATGCCTCCAAGACTTCCAATCCAACCTCACATCCCTCTCACTCCCCAACAACCTTGTCTCCTCATGCTTTGATCCACTCCAATTTGTCATCACCCCCAACATATGTGCTCACATTCAAAACATACAAGATTGGCTCACCCTCCTTGGTCCCACACCACAGCTCAACACTGCATGCAAACCAGATCTCACTGACACTAACCAATGCAACATGTGTGTGGCAGAAGGGTACAAGGTTCAGCAGAAGCTCAGTGCCATTGATGGTAATGATTCACATTCCCAAGATTGTTTCTACTTCACAGCACTTTACATGGCTGGAGTTGTCAATGAGTTTGGCCCTGAAAGCAAAGGTGCTTTGTCTTGCATTTTGATTTTGCTGGTCAATTCACAAGTTGATTCAAAGAATGGCCATCATGGTCTTGTATTTGGTTTGATTATAGCTTCACTTGCATTCCTGGTGATCATGTTGTTAGGATTAGGGTTTTATTTTTGGTACACCAAGAGAAAAAGTGTTGAAAATTTGCTAGCCTATGGTAATCTACAGGAACAAGGGTTCAGCCTAAGACTGAGACCTAATGCAGTGTTGACTTGGTTTGAATTTGAGGACCTTGTGAGGGCCACCAACAATTTTTCTCCTCAGAACTTCATTGGAAGAGGTGGGTTTGGGTCGGTTTACAAGGGCATTCTACCTGATGGCACTACGGTTGCAGTGAAAAAGCTTGAAGAATCTGATTCTCAAGGAGATGCTTTATTCTACAGTGAGGTGGAGATTGTTAGCAACTTGAAGCACCGTAATTTAGTGCCACTGAGAGGGTGTTGTGTGGTTGATGAAGTGGATGAGAATCACATTCTTGAGTACAGAAGAAGGTATCTTGTTCATGATTATATGCCAAATGGTAGCCTTGAAGACCATCTCTTTCCAACCAAATTGGACAATCAGAATACAAAGAAATCCCTGACTTGGCCTCAAAGAAAAAGCATAATCTTGGATGTGGCAAATGCATTGGTGTATTTGCACTTCGGAGTTAAACCTGCAGTTTATCACAGAGATATCAAAGCCACCAATATACTACTTGATGCAGATATGAGGGCAAGGGTTGGAGATTTCGGGCTAGCAAAACGGAACAGTGAAAGTAGGTCTCATCAAAATACTAGAGTAGCCGGAACTCGTGGATATGTAGCACCTGAGTATGCACTTTATGGTCAACTAACTGAGAAGAGTGATGTTTATAGCTTTGGTGTAGTTATTCTGGAGATAATGTGTGGAAGGAAAGCCCTTGAGGTGTCTTCATCAGGGGCACCGATTTTTTTGATCACAGATTGGGTTTGGTCATTGATGAAATCGGGAAACTTAGGAGAGGCCTTGGATACTTTTATGTTGGGAGATGGAAAGTCTGCTAGAAACATAATGGAGAGGTTTTTGCTGGTTGGAATTCTTTCTTCTCATGTAATGGTTGCTTCAAGGCCAACAATTTTGAATGCTTTGAAGATGCTAGAAGGTGATATTGAAGTGCCACCAATTCCAGATAGGCCAGTGACTCATGGGCATTATGTGATGTACAGTGGTGATTGCTCTGGGATGAGCTCAGGGTTTGTAAGCTCATGA 1902 0.4348 MESILVLLLIFVAVSAAPSPSPSATISPTNNSTCPVAMNYVQTVPWNISACHNFQPLSFQNQTLTTPCCQTLLSLFGIALAKNLKKHSLFQLPNLPTSISCLQDFQSNLTSLSLPNNLVSSCFDPLQFVITPNICAHIQNIQDWLTLLGPTPQLNTACKPDLTDTNQCNMCVAEGYKVQQKLSAIDGNDSHSQDCFYFTALYMAGVVNEFGPESKGALSCILILLVNSQVDSKNGHHGLVFGLIIASLAFLVIMLLGLGFYFWYTKRKSVENLLAYGNLQEQGFSLRLRPNAVLTWFEFEDLVRATNNFSPQNFIGRGGFGSVYKGILPDGTTVAVKKLEESDSQGDALFYSEVEIVSNLKHRNLVPLRGCCVVDEVDENHILEYRRRYLVHDYMPNGSLEDHLFPTKLDNQNTKKSLTWPQRKSIILDVANALVYLHFGVKPAVYHRDIKATNILLDADMRARVGDFGLAKRNSESRSHQNTRVAGTRGYVAPEYALYGQLTEKSDVYSFGVVILEIMCGRKALEVSSSGAPIFLITDWVWSLMKSGNLGEALDTFMLGDGKSARNIMERFLLVGILSSHVMVASRPTILNALKMLEGDIEVPPIPDRPVTHGHYVMYSGDCSGMSSGFVSS 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02025 633 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 19 614 - -
Cca09g02025 633 ProSiteProfiles Protein kinase domain profile. 309 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02025 633 SMART serkin_6 309 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02025 633 SUPERFAMILY Protein kinase-like (PK-like) 289 597 IPR011009 -
Cca09g02025 633 Pfam Protein kinase domain 312 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02025 633 Gene3D Transferase(Phosphotransferase) domain 1 395 603 - -
Cca09g02025 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Cca09g02025 633 CDD STKc_IRAK 315 599 - -
Cca09g02025 633 Gene3D Phosphorylase Kinase; domain 1 278 394 - -
Cca09g02025 633 Pfam SPARK 30 196 IPR043891 -
Cca09g02025 633 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 19 614 - -
Cca09g02025 633 ProSitePatterns Protein kinases ATP-binding region signature. 315 338 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02025 Cca-Chr9 45337922 45340581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02025 26 615 Receptor kinase-like Gene Family AT1G11050 56.711 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Cca09g02025 Pkinase 5.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02025 - - gmx:100788367 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02025 09 45337922 45340581 Cca09g02025 09 45337922 45340581 ECH
Cca08g02777 08 62153170 62156104 Cca09g02025 09 45337922 45340581 PCT