Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02019 ATGGATTGTGGCAATTTCCAAAGCACTCCAAACAAGGAGTATGATGGCCATAAGGAACCAATTTTCTTACATGGTGACTTGGATCTCTTCATAATAGAAGCTAAGTCTCTTCCAAATTTAGATTTATCTAGTGAAGCAGTTAGAAAATGTATCACTATGGGCAGCATGTGCCATCCTCCATTTATAAAAGGACTAAAGACACACTCTGGAAAAGATAAGATGATAACTAGTGACCCTTATGTTTCTATATGCATAGCTGGGGCCACCATAGCTCAGACTAGAGTGATTCCTAACTGTGAGAACCCTTTGTGGGATGAGCAATTTATTGTGCCTGTTGCTCACCCTACTCAAAAGGTGGAGTTCCTTGTGAAGGATAATGATATTCTTGGGGCTGAACTCATTGGAGTGGTGGAGATACCTGTTCACAAGATAATTTCAGGAAATGTTATTAATGATTGGTTTCCCATCATTGGTCAGTATGGAAACTGCTTAAAACCTTATCCTGAGTTGCATATTTCTGTTCAGTATAAGCCAATTGGAGTGATCCGTGCAGAAAGTATCAGTAATGGGGATCTGAATCTAGAGGTTCCTAAAACATATTTCCCTCTCAGGAAAGGAGGGAGTGTGACTCTGTATCAAGATGCACATTTACCAGATGGTATGCTACCTGAAATTCCACTTGAGGGTGGAAAAGTGTTTCAGCACACTAAATGTTGGGAGGATATATGCCATGCAATTTTGGAAGCTCATCACATGATATACATTATAGGATGGTCAGTTTACCACCCAGTGAGGCTTGTCAGAGAGCCAACAAAACCATTACCTTCTGGGGGAGAGCTTTCACTTGGAGAGCTGTTGAAGTACAAGTCACAAGAAGGACTCAGAGTCGTTATGCTAATTTGGGACGACAGAACTTCACATGACAAGTTTCTTTTGAAAACAGATGGTGTCATGCAGACTCACGATGAAGAAACTAAGAAGTTTTTTAAACATTCCACTGTTCATTGTGTGCTATCTCCTCGTTATGCAAGCAATAAGCTCAGTATTTTCAAGCAACAGGTTGTTGGAACCCTCTTTACGCATCACCAGAAATGTGTGATTGTAGACAGTCAAGGTTCTGGGAATAATCGGAAAATAACAGCTTTTCTTGGTGGTTTGGATCTGTGTGATGGAAGATATGATACTCCTGAGCATCGTCTTTTTAATGATCTAGATACAGTATTTCATAATGATTTTCACAATCCTACATTTCAATTAAGTTCGCATTCGCATGCACATGCACCAAGGCAGCCTTGGCATGACTTACATTGCAAAGTTGAAGGTCCAGCAGCATATGATATATTGACCAATTTTGAACAAAGATGGAGGAAGGCCAAAAAATGGCGTGACTTCAGGCTCAAAAAGGTGACAAACTGGCATGATGATGCTTTGCTAAGGCTAGACCGCATTTCATGGATTGACAAACCTTCTCCTGGTTCCAATGATGATAGAGCCGGTCATGTAACTGATGAAAATGATCCTGAGAGTTGGCATGTGCAGGTATTTAGGTCCATAGATTCTGGATCTGTGAAGGGATTTCCAAAGGATTGTGACAAAGCTAAGGCTCAGAATCTTTTATGTGGAAAAAATTTGAAAGTAGATCAAAGCATCCATACTGCTTATGTAAGAGCAATAAGATCTGCTGAGCACTTTATATATATTGAGAATCAATATTTTTTGGGCTCCTCCTATCATTGGCCTTCATATAAAAATAATGCAGGTGCAAATCACTTGATTCCCATGGAGTTGGCTTTGAAAATTTCCAGTAAGATCAGTGCAAATGAACGTTTTTCTGTGTATATAGTTATACCAATGTGGCCAGAGGGTGTTCCAACAAGTGCTTCAGTTCAAGAAATTTTGTTTTGGCAGGGACAGACAATGTCTATGATGTACAAGATTGTAGCTGATGCCCTTAAAAAAGCAGGTCTCTCTGGTCAGTATCATCCACAAGATTATCTCAATTTTTACTGCCTTGGAAAGAGAGAACCTCAATCCTCAAAAGTTCCATCACCGCCAAATCAATCTGAAAACCGCCCTTTGGTATCAGTTAAAAGATTCAGACGTTTTATGATTTATGTTCATGCAAAAGGAATGATAGTTGATGATGAATACGTAATTATTGGATCAGCAAATATAAACCAGAGATCATTAGATGGTTCAAGGGACACAGAAATAGCTATGGGTGCTTCTCAACCAAAATATACATGGACAGAAAAGAACTCTCATCCACATGGCCAGGTGTATGGATACAGAATGTCACTGTGGGCTGAGCACCTTGGTATTCTTGAAGATGTTTTTGGTGAGCCTGACAGCCTGCACTGTATTAGACAAGTCAACAAAATAGCCAGACAAAACTGGGACACATATGTGTCTGATGAAGGGAATCATTTGAGGGGACACTTAATGCAGTATCCAGTTAAGGTCAGCAATGATGGAAAAGTTAGTGCACTCGATGATTATGACTCCTTTCCTGATGTTGGTGGCAAAATTCTTGGATCACCAAATTCACTTCCAGATGCACTAACCACGTGA 2571 0.3995 MDCGNFQSTPNKEYDGHKEPIFLHGDLDLFIIEAKSLPNLDLSSEAVRKCITMGSMCHPPFIKGLKTHSGKDKMITSDPYVSICIAGATIAQTRVIPNCENPLWDEQFIVPVAHPTQKVEFLVKDNDILGAELIGVVEIPVHKIISGNVINDWFPIIGQYGNCLKPYPELHISVQYKPIGVIRAESISNGDLNLEVPKTYFPLRKGGSVTLYQDAHLPDGMLPEIPLEGGKVFQHTKCWEDICHAILEAHHMIYIIGWSVYHPVRLVREPTKPLPSGGELSLGELLKYKSQEGLRVVMLIWDDRTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCVLSPRYASNKLSIFKQQVVGTLFTHHQKCVIVDSQGSGNNRKITAFLGGLDLCDGRYDTPEHRLFNDLDTVFHNDFHNPTFQLSSHSHAHAPRQPWHDLHCKVEGPAAYDILTNFEQRWRKAKKWRDFRLKKVTNWHDDALLRLDRISWIDKPSPGSNDDRAGHVTDENDPESWHVQVFRSIDSGSVKGFPKDCDKAKAQNLLCGKNLKVDQSIHTAYVRAIRSAEHFIYIENQYFLGSSYHWPSYKNNAGANHLIPMELALKISSKISANERFSVYIVIPMWPEGVPTSASVQEILFWQGQTMSMMYKIVADALKKAGLSGQYHPQDYLNFYCLGKREPQSSKVPSPPNQSENRPLVSVKRFRRFMIYVHAKGMIVDDEYVIIGSANINQRSLDGSRDTEIAMGASQPKYTWTEKNSHPHGQVYGYRMSLWAEHLGILEDVFGEPDSLHCIRQVNKIARQNWDTYVSDEGNHLRGHLMQYPVKVSNDGKVSALDDYDSFPDVGGKILGSPNSLPDALTT 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02019 856 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 357 392 IPR001736 GO:0003824
Cca09g02019 856 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 702 729 IPR001736 GO:0003824
Cca09g02019 856 SMART pld_4 702 729 IPR001736 GO:0003824
Cca09g02019 856 SMART pld_4 357 392 IPR001736 GO:0003824
Cca09g02019 856 Pfam Phospholipase D Active site motif 358 392 IPR001736 GO:0003824
Cca09g02019 856 Pfam Phospholipase D Active site motif 703 729 IPR001736 GO:0003824
Cca09g02019 856 Gene3D Endonuclease Chain A 230 477 - -
Cca09g02019 856 CDD C2_plant_PLD 20 176 - -
Cca09g02019 856 PIRSF PLD_plant 13 856 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cca09g02019 856 Gene3D Endonuclease Chain A 506 753 - -
Cca09g02019 856 SMART C2_3c 26 153 IPR000008 -
Cca09g02019 856 Gene3D C2 domain 21 177 IPR035892 -
Cca09g02019 856 SUPERFAMILY Phospholipase D/nuclease 197 463 - -
Cca09g02019 856 Pfam C2 domain 25 156 IPR000008 -
Cca09g02019 856 PANTHER PHOSPHOLIPASE D 20 856 IPR015679 -
Cca09g02019 856 SUPERFAMILY Phospholipase D/nuclease 548 786 - -
Cca09g02019 856 Pfam Phospholipase D C terminal 776 846 IPR024632 -
Cca09g02019 856 ProSiteProfiles C2 domain profile. 4 154 IPR000008 -
Cca09g02019 856 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 23 178 IPR035892 -
Cca09g02019 856 PANTHER PHOSPHOLIPASE D 20 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02019 Cca-Chr9 45277683 45285575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02019 21 855 Phospholipase D Gene Family (Wang group) AT2G42010 52.982 0.0 911
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02019 K01115 - gmx:100779740 1588.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02019 09 45277683 45285575 Cca09g02019 09 45277683 45285575 ECH