Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02018 ATGGGTAAGGGCCCCTTCTCCTTCCGCCGCTCCGCCTCTCGCCGCCGCCCCAAGAAGGCCGCCGCCCCGCCCCCGCCCCCGTCTCCGCCGCAACCCGCCTACGCCGCCGGAATCGCCGCCTCGCCCGACGACAACCCTAACAACCGCCTCGTCGCAGCCGCGGGCGCCACCGCTTTAACCAAGCCCAAGAAAAAAACCGGTGGGGCCCGGTTGTGGATGCGGTTTGACCGGTCCGGCCGGTCGGAACTCGTCGAGTGGGAGAAAAACGCCATCATCCGCCACGCCGCGATTCCCGCTAGAGACTTGAGAATTCTGGGTCCCGTCTTCTCCCACTCCTCCAACATCCTCGCTAGGGAGAAAGCAATGGTGGTTAATTTGGAGTTTATAAAGGCCATAGTGACTGCTGAAGAAGTACTATTGCTTGATCCTCTCAGGCAGGAGGTTCTTCCCTTTGTTGAGCAGCTCAGGCAGCAGCTTCCTGTTAAAAGTCAACCTAAACTTGCTGGGGCATCCGAGGAGCGTGAAGGTGAAATGCAGGCTTCCAATGGCAGGCAGTGGTTGCCTGTGCCGGAGCTGGCCGAAGGCTTGCAGTCTGAGCTTCCATTTGAGTTTCAAGTTCTCGAGATCGCCTTGGAGGCTGTGTGTACTTATCTAGACTCGAGTGTGGCAGACCTTGAGAGAGGAGCTTACCCCGTGTTGGATGAATTGGCTAGGAACGTTAGCACCAAGAATCTTGAACATGTGAGGAGTTTGAAGAGCAATCTCACGCGGTTGCTCGCACGGGTGCAAAAGGTGCGAGATGAAATTGAACATCTATTAGATGACAATGAAGATATGGCACAACTATATTTGACAAGGAAGTGGTTGCAGAATCAACAATTCGAGGCTCATATGGGTGCCACAACCTCAAATAACCTTCTTAGTATCTCACATTCTGTTCGTCGACTTGGTTCCACCAGAAGTGAAAGTCTTGCGACCAGCCATTATGGGGAAGATAATGATGTGGAGGACTTGGAGATGTTGCTTGATGCATATTTCATGCAGTTAGATGGAACCCGTAACAAGATATTATCTGTAAGTGTTCTTGTGACAAGATTCTGGTCCACTTATGTTTCTATCAAATTTTGA 1128 0.5248 MGKGPFSFRRSASRRRPKKAAAPPPPPSPPQPAYAAGIAASPDDNPNNRLVAAAGATALTKPKKKTGGARLWMRFDRSGRSELVEWEKNAIIRHAAIPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVLPFVEQLRQQLPVKSQPKLAGASEEREGEMQASNGRQWLPVPELAEGLQSELPFEFQVLEIALEAVCTYLDSSVADLERGAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAQLYLTRKWLQNQQFEAHMGATTSNNLLSISHSVRRLGSTRSESLATSHYGEDNDVEDLEMLLDAYFMQLDGTRNKILSVSVLVTRFWSTYVSIKF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02018 375 MobiDBLite consensus disorder prediction 163 183 - -
Cca09g02018 375 CDD Mrs2_Mfm1p-like 72 356 IPR039204 -
Cca09g02018 375 Gene3D Magnesium transport protein CorA, transmembrane region 144 370 - -
Cca09g02018 375 MobiDBLite consensus disorder prediction 1 46 - -
Cca09g02018 375 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 360 IPR039204 -
Cca09g02018 375 MobiDBLite consensus disorder prediction 19 33 - -
Cca09g02018 375 Coils Coil 248 282 - -
Cca09g02018 375 Gene3D - 58 143 - -
Cca09g02018 375 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02018 Cca-Chr9 45263177 45266570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02018 1 359 MRS2 Gene Family AT3G58970 63.536 2.13e-147 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02018 K16075 - gmx:100812561 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02018 09 45263177 45266570 Cca01g00136 01 1334456 1337356 PCT