Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02017 ATGGCAAATTCAAAGGGTTCATCGGGTGTGAGAAATTTTATGTATTCTGGAAAGCATGCTCTGCTTCCTCCTAAAAGCCCATTTCCTAGTGTTTCCCAAGCGTACAGTGATTATGTCCCAAATTCTGCTGTTGGTTTAAAGGCTGGTAACAGACCTAGAGAGGGAAACTCACACCACCAACGTACTTCATCTGAGAGCCTTGTTATAGAGGAGCAGCCTTCATGGCTTGATGATCTCCTTAATGAGCCAGAGACACCTATCCGAAGAGGTGGCCATAGGCGTTCATCAAGTGATTCTTTTGCATACATAGATGCGGTTAATGCATCTAACATCAATTATGCCGATCAGGATGAGTATAAATACAAAAATTTGATGTCTATTCCATCTTGGACATCTCAAGACTTTGACCACAGCAAAGATGCTCGTCATATACCTGTTTATCCAGAAATGAACTTAGCAAAACTGAAAAATAGGTCATGGGACTCCTTTTCAAATGTCATGACAAATCCAGTTGGTGTTCCCTCTGGAAAAGACACTGCTGCTTTTCAGGGTTCAGGATTGCCATGTACACCACATGAAGCAGATGGGGTTCCACAAACTGCAATTGAAAAGCATGATTCAGTAGAATCTGGTTTACAAGATGCAAAATCATTTTCTGAAAAAAAGGACAGCTCACATGGAAAGCCATCTGCCTCTGAAACTGATACAAAACGTGCTAAACAGCAATTTGCTCAACGTTCGCGAGTCCGGAAACTTCAATACATAGCTGAGCTGGAAAGAAATGTACAAGCTTTACAAGCAGAAGGTTCGGAAGTCTCAGCTGAGCTTGAGTTTCTTAACCAGCAGAATCTTATCCTGAATATGGAAAATAAAGCACTCAAGCAACGTTTAGAAAGTATAGCACAAGAGCAGCTTATCAAATATTTGGAGCAGGAAGTACTGGAAAGAGAGATTGGAAGATTACGTTCATTGTATcagcagcaacaacagcagcagcaacacccgcaacagcaACCATCTGGTAGTCATAGACGCTCAAACAGCAGAGACCTCGAATCTCAGTTTGCAATCCTTTCTCTAAAACACAAGGACACCGATTCAGGGCAAGACCCTGCTCTCAGAATTTAG 1128 0.4016 MANSKGSSGVRNFMYSGKHALLPPKSPFPSVSQAYSDYVPNSAVGLKAGNRPREGNSHHQRTSSESLVIEEQPSWLDDLLNEPETPIRRGGHRRSSSDSFAYIDAVNASNINYADQDEYKYKNLMSIPSWTSQDFDHSKDARHIPVYPEMNLAKLKNRSWDSFSNVMTNPVGVPSGKDTAAFQGSGLPCTPHEADGVPQTAIEKHDSVESGLQDAKSFSEKKDSSHGKPSASETDTKRAKQQFAQRSRVRKLQYIAELERNVQALQAEGSEVSAELEFLNQQNLILNMENKALKQRLESIAQEQLIKYLEQEVLEREIGRLRSLYQQQQQQQQHPQQQPSGSHRRSNSRDLESQFAILSLKHKDTDSGQDPALRI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02017 375 Coils Coil 311 331 - -
Cca09g02017 375 Coils Coil 248 303 - -
Cca09g02017 375 CDD bZIP_plant_RF2 235 283 IPR044759 GO:0003700|GO:0006355
Cca09g02017 375 Gene3D - 237 290 - -
Cca09g02017 375 MobiDBLite consensus disorder prediction 42 68 - -
Cca09g02017 375 PANTHER - 1 368 - -
Cca09g02017 375 MobiDBLite consensus disorder prediction 176 245 - -
Cca09g02017 375 SUPERFAMILY Leucine zipper domain 244 286 IPR046347 GO:0003700|GO:0006355
Cca09g02017 375 MobiDBLite consensus disorder prediction 325 344 - -
Cca09g02017 375 SMART brlzneu 233 292 IPR004827 GO:0003700|GO:0006355
Cca09g02017 375 MobiDBLite consensus disorder prediction 325 349 - -
Cca09g02017 375 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 1 368 IPR044797 -
Cca09g02017 375 MobiDBLite consensus disorder prediction 198 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02017 Cca-Chr9 45249684 45255162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02017 20 307 bZIP Transcription Factor Family AT2G42380 31.293 6.10e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02017 - - gmx:100813098 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02017 09 45249684 45255162 Cca09g02017 09 45249684 45255162 ECH