Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02015 ATGGAGATACACTACAGTAACAGCTACTTCGAGAGGCGCCCCATCCTCAAGTCCAAGGCTCCCGCAGTTAAATGGGTCAGAGAATGGGTTCCCCAGGATCTTGTAACGACTGGAGGGAAGTGCATGCTCTTAAAATGGGTAACAGAGGATACCTTGAAGACCTTGAAAGAAAAGACAAAAGAGCCATCAATGCCTGAGCCAGAACCAGAGCCAACTACTGAAGTACTCTTTCTTTGCAGCTATGATGGCTGTGGAAAGACATTCATAGATGCTGGTGCATTGAGGAAGCACTCTCACATCCATGGAGAGAGGCAATATGTTTGTCACTATGAGGGATGTGGAAAGAAATTTCTGGACAGTTCAAAGTTGAAAAGACATTTTCTCATTCATACAGGGGAGAGGGACTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCTTGGATTTCAACTTAAGGTCTCACATGAAGACACATTCCCAAGAGAACTATCATATCTGCCCGTACCCAGATTGTGGAAAGAGATATGCTCACGAATACAAACTTAAGAATCACATTTCATCTCATCACGAAAAGAATGCAACTGTGGATGTGGCAAAGTACACTCCACCTTCAGAGAAGCAAACAAAAACTACAAAACCTTCTGGAGGGGCATATGGTTCTGCATCATCTGATCGCCCCTATACATGTCCTTATGACGGGTGTGAAAAGGCATACATCCATGAATACAAGCTTAGACTCCATTTGAAGAGGGAACACCCGGGGGAGCTTATGCCTGAAGAAAATGCAGAGCATGCTCAGGCTAATGCTGAGAATGAAATGGATGAAGCAAGTGACCAAGATGCCTATGTTGGGAAACGGTCAAATGGTAAAGTTCAGAAGCAAAGTAAGCCTAAGCCAAACCTCAAGTTGCCTCCTTCCAAAATTGCAAAACGCAAAGTTTCCACTCCCTCTTTAACTGTAAATAAAAGTTCTTGGTCCGTGAAAGATGAACCTTACGATGAGGAAGACAGCGAAGAAACAGAAGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCAGGAGGAAACAATGAAGAGGATGATGAAGAAACAGAATATGAAGACTGA 1116 0.4382 MEIHYSNSYFERRPILKSKAPAVKWVREWVPQDLVTTGGKCMLLKWVTEDTLKTLKEKTKEPSMPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHISSHHEKNATVDVAKYTPPSEKQTKTTKPSGGAYGSASSDRPYTCPYDGCEKAYIHEYKLRLHLKREHPGELMPEENAEHAQANAENEMDEASDQDAYVGKRSNGKVQKQSKPKPNLKLPPSKIAKRKVSTPSLTVNKSSWSVKDEPYDEEDSEETEEDRDNVEDGWRYAGGNNEEDDEETEYED 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02015 371 MobiDBLite consensus disorder prediction 314 328 - -
Cca09g02015 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 259 IPR013087 -
Cca09g02015 371 Gene3D Classic Zinc Finger 201 272 - -
Cca09g02015 371 MobiDBLite consensus disorder prediction 203 220 - -
Cca09g02015 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Cca09g02015 371 Gene3D Classic Zinc Finger 163 195 - -
Cca09g02015 371 Gene3D Classic Zinc Finger 103 133 - -
Cca09g02015 371 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Cca09g02015 371 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Cca09g02015 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Cca09g02015 371 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Cca09g02015 371 MobiDBLite consensus disorder prediction 333 347 - -
Cca09g02015 371 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Cca09g02015 371 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Cca09g02015 371 PANTHER BNAA03G13270D PROTEIN 4 370 - -
Cca09g02015 371 SMART c2h2final6 166 190 IPR013087 -
Cca09g02015 371 SMART c2h2final6 136 160 IPR013087 -
Cca09g02015 371 SMART c2h2final6 106 130 IPR013087 -
Cca09g02015 371 SMART c2h2final6 229 254 IPR013087 -
Cca09g02015 371 SMART c2h2final6 77 101 IPR013087 -
Cca09g02015 371 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Cca09g02015 371 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Cca09g02015 371 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Cca09g02015 371 Gene3D Classic Zinc Finger 77 102 - -
Cca09g02015 371 Gene3D Classic Zinc Finger 134 161 - -
Cca09g02015 371 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Cca09g02015 371 MobiDBLite consensus disorder prediction 260 371 - -
Cca09g02015 371 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 4 370 - -
Cca09g02015 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Cca09g02015 371 SUPERFAMILY beta-beta-alpha zinc fingers 117 169 IPR036236 -
Cca09g02015 371 MobiDBLite consensus disorder prediction 188 227 - -
Cca09g02015 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Cca09g02015 371 Coils Coil 261 281 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02015 10 356 C2H2 Transcription Factor Family AT4G06634 65.027 2.96e-144 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca09g02015 zf-C2H2 0.0092 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02015 - - gmx:100811480 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02015 09 45236700 45240432 Cca09g02015 09 45236700 45240432 ECH