Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02008 ATGGAAAGCATTGCCGCGCAGCTGAAGCGCGGCATCTCGCGCCAGTTCTCGTCGGGGTCGCTGCGGAAGAATCTGAGCCGCCAGTTCACGCGCCAGGCCTCGCTGGATCCGCGCCGGAACAACCAGCGCTTCAGCTTCGGCCGCCAGTCCTCGCTCGATCCGATACGCCGGAGCCCGGGGCCGGACCACGCCGAGCTATCGGTGCCCGAGAATCTCGACTCCACCATGCAGCTGCTCTTCATGGCCTGCCGCGGCGACGTCAGGGGAGTCGAGGACCTGCTCAACGAAGGCATCGACGTCAACAGCATCGACCTCGACGGCCGCACCGCCCTCCACGTCGCCGCCTGCGAGGGACACGTCGAAGTCGCCAAGCTCTTGCTCACACGCAAGGCCAACATCGACGCTCGCGATCGCTGGGGCAGCACTGCGGCGGCGGATGCCAAATATTATGGGAATACAGAAATTTATTACATGTTGAAGGCTCGAGGAGCGAAAGTGCCGAAAACCAGGAAGACTCCAATGACTGTTGCGAATCCTCGTGAAGTTCCGGAATATGAACTCAACCCGTTAGAGCTACAGGTTCGGAAGAGTGATGGTATTTCAAAGGGAATATACCAAGTAGCTAAATGGAATGGCACAAAGGTTGCAGTGAAGATACTTGACAAGGACAGTTATTCAGATCCTGATTCCATAAATGCTTTCAAGCACGAGCTCACATTATTAGAAAGGGTGCGACATCCGAACGTGGTCCAGTTTGTTGGAGCTGTCACCCAAAATATACCTATGATGATTGTTCGTGAGTACCATGCTAAGGGTGACCTGGCAAGTTATCTTCAAAAGAAAGGGCGTTTGTCCCCATCAAAAGTTCTACGGTTTGCTCTTGATATTGCTAGGGGCATGAACTATCTTCATGAATGCAAACCAGATCCAGTTTTTCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGGCAATTGAAGATAGCTGGATTTGGCACGGTGAGACTTACACTAATCTCACCTGATGAAGCAACACTGGTACAGCCTGAGCCTAACATTGATCTTTCAAGCGTGTACGTGGCACCGGAGATTTACAAAGATGAAGTATTTGATAGAAGTGTGGATGCATATTCTTTTGGTCTCATTATATACGAGATGATAGAGGGTGTACAGCCCCTCCATCCCAGGTCCCCTGAGGAGGCAGTGAAGCTGATGTGTTTAGAAGGGTTAAGACCACCATTCAAGATCAAAACAAAACATTACCCTCCGGATTTGAAAGAGTTGATTGAGGAATGTTGGGATCCACAACCCGTTGTCAGGCCAACATTTTCTCAGGTCATTGTACGGTTGGACAAAATTGTTGCGAATTGCTCGAAACAAGGATGGTGGAAAGATACTTTTAAACTTCCATGGAAATAA 1428 0.5 MESIAAQLKRGISRQFSSGSLRKNLSRQFTRQASLDPRRNNQRFSFGRQSSLDPIRRSPGPDHAELSVPENLDSTMQLLFMACRGDVRGVEDLLNEGIDVNSIDLDGRTALHVAACEGHVEVAKLLLTRKANIDARDRWGSTAAADAKYYGNTEIYYMLKARGAKVPKTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGIYQVAKWNGTKVAVKILDKDSYSDPDSINAFKHELTLLERVRHPNVVQFVGAVTQNIPMMIVREYHAKGDLASYLQKKGRLSPSKVLRFALDIARGMNYLHECKPDPVFHCDLKPKNILLDNGGQLKIAGFGTVRLTLISPDEATLVQPEPNIDLSSVYVAPEIYKDEVFDRSVDAYSFGLIIYEMIEGVQPLHPRSPEEAVKLMCLEGLRPPFKIKTKHYPPDLKELIEECWDPQPVVRPTFSQVIVRLDKIVANCSKQGWWKDTFKLPWK 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02008 475 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 33 473 - -
Cca09g02008 475 ProSiteProfiles Protein kinase domain profile. 190 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02008 475 MobiDBLite consensus disorder prediction 27 68 - -
Cca09g02008 475 SUPERFAMILY Ankyrin repeat 75 175 IPR036770 -
Cca09g02008 475 ProSiteProfiles Ankyrin repeat profile. 106 138 IPR002110 GO:0005515
Cca09g02008 475 SUPERFAMILY Protein kinase-like (PK-like) 207 453 IPR011009 -
Cca09g02008 475 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 33 473 - -
Cca09g02008 475 Pfam Ankyrin repeats (many copies) 93 143 IPR002110 GO:0005515
Cca09g02008 475 Gene3D Phosphorylase Kinase; domain 1 189 269 - -
Cca09g02008 475 Gene3D Transferase(Phosphotransferase) domain 1 270 469 - -
Cca09g02008 475 ProSiteProfiles Ankyrin repeat region circular profile. 106 138 - -
Cca09g02008 475 Pfam Protein tyrosine and serine/threonine kinase 202 452 IPR001245 GO:0004672|GO:0006468
Cca09g02008 475 PIRSF ILK 8 474 - -
Cca09g02008 475 MobiDBLite consensus disorder prediction 27 52 - -
Cca09g02008 475 SMART serkin_6 194 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02008 475 SMART ANK_2a 106 135 IPR002110 GO:0005515
Cca09g02008 475 SMART ANK_2a 74 102 IPR002110 GO:0005515
Cca09g02008 475 Gene3D - 28 185 IPR036770 -
Cca09g02008 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02008 Cca-Chr9 45147173 45152761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02008 1 474 MAP Kinase Kinase Kinase AT2G43850 77.615 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Cca09g02008 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02008 - - gmx:100810411 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02008 09 45147173 45152761 Cca09g02008 09 45147173 45152761 ECH