Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01999 ATGGGTAATTGCTGGTGTAGGTGGGAGTCATCAGAATATAGAGTCTCATCCAATGTAAAGTCAGAACAAAACCAGGGAAGCAAACAAAGAAACGATGATAGTAAGTTACCATCAAATCCTGAAGAAGTAGAAGACCTACGGCGTGACTCAGCTGCAAATCCTTTGATTGCATTCACTTATGATGAGCTAAAGAAAATCACTTCAAATTTTCGGCCAGATCGTGTGTTGGGGGGAGGAGGATTTGGAAGTGTGTATAAAGGCTTCATTTCTGAGGAGTTAAGGCAAGGGCTTCCTACCCTTGCCGTAGCTGTTAAGGTTCATGATGGTGACAACAGTCATCAAGGCCACAGAGAATGGCTGGCAGAAGTCATATTTTTGGGGCAGCTTTCACATCCAAATCTAGTGAAATTAATCGGATACTGCTGTGAAGATGAACATAGGGTGCTGATATATGAGTACATGTCCCGGGGAAGTGTTGAACATAATTTGTTCTCAAAAATTTTGCTTCCCATGCCATGGTCCATAAGAATGAAGATAGCATTTGGCGCTGCAAAGGGACTTGCATTTCTTCATGAAGCAGATAAACCAGTCATCTATCGAGATTTTAAGACATCAAATATTTTATTGGATCAGGACTACAATGCAAAACTTTCTGACTTTGGCCTAGCTAAGGATGGACCAGTTGGAGACAAATCCCATGTCTCTACTCGAATAATGGGAACATATGGTTATGCTGCACCTGAATACATAATGACAGGTCACCTGACTCCTAGAAGTGATGTTTACAGTTTTGGTGTTGTTCTTCTTGAACTTCTCACAGGAAGAAAATCTCTAGACAAGTTAAGACCTGCCAGAGAGCAGAACCTAGCAGAATGGGCCCTTCCTTTGCTGAAGGAAAAGAAGAAGTTTCTAAACATTATAGATCCAAGGTTGGATGGTGATTATCCAATCAAAGCAGTTCACAAGGCTGCAATGCTTGCATACCATTGCTTGAACCGCAACCCAAAAGCAAGGCCTCTAATGAGAGATATTGTGGACTCATTGGAGCCTTTGCAGGCACACACAGAGCTCCCTATTGGAAAAACATTGACCATAATCAGTGAGGTTTCTGAATCTGGCTTGAAAATGAAAGATGCAAAATGA 1143 0.4173 MGNCWCRWESSEYRVSSNVKSEQNQGSKQRNDDSKLPSNPEEVEDLRRDSAANPLIAFTYDELKKITSNFRPDRVLGGGGFGSVYKGFISEELRQGLPTLAVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLIGYCCEDEHRVLIYEYMSRGSVEHNLFSKILLPMPWSIRMKIAFGAAKGLAFLHEADKPVIYRDFKTSNILLDQDYNAKLSDFGLAKDGPVGDKSHVSTRIMGTYGYAAPEYIMTGHLTPRSDVYSFGVVLLELLTGRKSLDKLRPAREQNLAEWALPLLKEKKKFLNIIDPRLDGDYPIKAVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLQAHTELPIGKTLTIISEVSESGLKMKDAK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01999 380 Pfam Protein tyrosine and serine/threonine kinase 73 348 IPR001245 GO:0004672|GO:0006468
Cca09g01999 380 CDD STKc_IRAK 76 351 - -
Cca09g01999 380 Gene3D Transferase(Phosphotransferase) domain 1 154 363 - -
Cca09g01999 380 MobiDBLite consensus disorder prediction 16 46 - -
Cca09g01999 380 ProSiteProfiles Protein kinase domain profile. 70 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01999 380 MobiDBLite consensus disorder prediction 26 46 - -
Cca09g01999 380 SUPERFAMILY Protein kinase-like (PK-like) 46 348 IPR011009 -
Cca09g01999 380 PANTHER OS01G0588500 PROTEIN-RELATED 10 361 - -
Cca09g01999 380 Gene3D Phosphorylase Kinase; domain 1 32 153 - -
Cca09g01999 380 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL16-RELATED 10 361 - -
Cca09g01999 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Cca09g01999 380 ProSitePatterns Protein kinases ATP-binding region signature. 76 105 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01999 Cca-Chr9 45021158 45026875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01999 3 348 Glycoside Hydrolase AT3G07070 46.910 1.39e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca09g01999 PK_Tyr_Ser-Thr 6.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01999 - - gmx:100808795 743.421