Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01996 ATGGCACTTTGTATGCAGAGAGATTCAGCATCCAACAAGCACATGCACATGGATTGTGGCAAGTATGTGAGGTACACACCTGAACAGGTGGAGGCTTTGGAGAGGGTGTATGCTGAATGTCCCAAGCCTAGCTCTTCCAGAAGGCAACAACTCATTAGGGAGTGCCCTATCCTTGCTAACATAGAACCAAAGCAGATCAAAGTTTGGTTCCAGAATAGAAGATGTCGCGAAAAGCAGCGGAAGGAAGCCTCTCGCCTGCAGACAGTGAATAGAAAGCTGACTGCAATGAACAAGTTGTTAATGGAAGAGAATGACCGTCTGCAGAAGCAGGTCTCGCAGTTGGTTTATGACAATGGATACATGAAACAACAAATACATACTGCATCTGCTACTACTACTGACAATAGCTGTGAGTCTGTGGTATTGAGTGGTCAGCACCAACAGAAAAACCCAAAAACTCAGCATCCCCAGTGGGATGCTAACAACCCAGCTGGTCTTCTTGCAATTGCTCAGGAGACCCTGGCGGAGTTCCTTTCCAAAGCTACTGGAACTGCTGTCAACTGGGTCCAAATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCTGCAAGAGCCTGTGGCCTTGTGAGCCTGGAGCCCTCAAAGGTTGCCGAGATTCTCAAAGACCGTCCATCATGGTATCGTGATTGTCGATGCCTCAATGTATTGAGTGTGGTCCCGACGGGGAATGGGGGCACAATAGAGCTCATGTACATGCAGACATATGCACCAACAACATTGGCAGCAGCAAGAGACTTCTGGACTCTGAGATACACTACAAGTTTGGAAGATGGAAGTCTTGTGATTTGTGAGAGGTCCTTGACTTCTTCAACTGGTGGACCCACAGGGCCTCCTGCTTCAAACTTAGTAAGAGCTGAAATGCTTCCTAGTGGCTATCTAATTAGATCCTGCGAGGGTGGTGGATCTATTATTCACATTGTTGATCACGTTGATTTAGATGTTTGGAGTGTTCCTGAAGTATTGAGGCCCCTCTATGAATCATCAAAATTCTTGGCTCAGAAATTGACTACTGCTGCCTTGCGACATGTAAGACAGATTGCACATGAATCAAGTGGAGAAGTTCATTATGGCGGGGGTCGTCAGCCTGCTGTCTTGAGGACATTTAGTCAAAGACTTTGCAGAGGGTTCAATGATGCTGTGAATGGGTTTTCGGATGATGGTTGGTCACTGATGGGTAATGATGGGGTGGAAGATGTGACCATAGCCATAAACTCATCTCCCAACAAGTTTTTTGGTTCCCACTACAATGCATCAATGCTTCCAGCATTTGGAGGCGGGGTTTTGTGTGCCAAGGCATCAATGCTGCTGCAGAATGTTCCACCTGCTTTGCTTGTTCGTTTTTTGAGGGAGCATCGATCCGAGTGGGCTGATTATGGGGTTGATGCTTACTCTTCTGCATGTCTTAAAGCTAGTCCTTATGCAGTTCCTTGTGCTAGACCTAGTGGCTTCCCAAGCAGTCAGGTCATTTTACCACTTGCTCATACTATTGAGCATGAGGAGTTCTTGGAGGTAGTTCGTATCGAGGGTCATGCATTCCCCCCTGATGATGTAGCTTTGGCATGTGATATGTATCTACTTCAGCTGTGTAGTGGAGTTGATGAAAACGCAATTGGAGCATGTGCACAGCTTGTGTTTGCACCTATTGATGAATCATTTGCAGATGATGCTCTCTTGTTGCCTTCTGGTTTCCGCATCATACCATTGGATCCTAAAACAGATGGTCTGGCATCAACTAGGACATTGGACTTGGCATCAACAATGGAAATAGGATCCAGTAATGTCCGTCCGGCTGGTGAAAGTGATTTGAATGACTACAACCTTAGGTCGGTTCTTACAATTGCATTCCAATTTACCTTTGAGAACCATTTGCGGGACAATGTGGCTGTTATGGCTCGCCAATATGTACGCAATGTTGTGCGATCTGTTCAGAGGGTTGCCATGGCAATTGCTCCCTCCCGACTCGGTGCCCAGTCGGGGCCAAAGTCAATTCCTGGTCCTCCAGAGGCTCTTACCTTGGCAAGATGGATCTGCAGAAGCTACAGGCTCCACACCTGCACAGAGCTTTTTAGAGTTGAGTCCACATCTGGTGATGCAATTTTGAAGCAACTTTGGCACCATTCAGATGCAATATTGTGCTGTTCTATAAAAACAAATGCATCTCCAGTGTTCACCTTTGCAAACCAAGCTGGACTTGACATGCTTGAAACCACTCTTGTTGCTCTTCAAGACATAGTGCTTGATAAAGTTCTTGATGAAGCTGGCAGAAAGGTCCTCTGCATTGAGTTCTCCAAGATAATGCAACAGGGGTTTGCATATCTGCCAGCGGGAATATGTGTATCTAGTATGAATCGACCAGTGTCCTATGAACAAGCCATTGCATGGAAAGTTATGGATGATGATGATTCCAATCACTGCTTGGCCTTCGTGTTCATGAACTGGTCTTTTGTCTGA 2547 0.4633 MALCMQRDSASNKHMHMDCGKYVRYTPEQVEALERVYAECPKPSSSRRQQLIRECPILANIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVYDNGYMKQQIHTASATTTDNSCESVVLSGQHQQKNPKTQHPQWDANNPAGLLAIAQETLAEFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPSKVAEILKDRPSWYRDCRCLNVLSVVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPASNLVRAEMLPSGYLIRSCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKFLAQKLTTAALRHVRQIAHESSGEVHYGGGRQPAVLRTFSQRLCRGFNDAVNGFSDDGWSLMGNDGVEDVTIAINSSPNKFFGSHYNASMLPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSSACLKASPYAVPCARPSGFPSSQVILPLAHTIEHEEFLEVVRIEGHAFPPDDVALACDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRIIPLDPKTDGLASTRTLDLASTMEIGSSNVRPAGESDLNDYNLRSVLTIAFQFTFENHLRDNVAVMARQYVRNVVRSVQRVAMAIAPSRLGAQSGPKSIPGPPEALTLARWICRSYRLHTCTELFRVESTSGDAILKQLWHHSDAILCCSIKTNASPVFTFANQAGLDMLETTLVALQDIVLDKVLDEAGRKVLCIEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIAWKVMDDDDSNHCLAFVFMNWSFV 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01996 848 Pfam Homeodomain 22 79 IPR001356 GO:0003677
Cca09g01996 848 SUPERFAMILY Bet v1-like 169 378 - -
Cca09g01996 848 Pfam START domain 169 377 IPR002913 GO:0008289
Cca09g01996 848 SMART START_1 168 378 IPR002913 GO:0008289
Cca09g01996 848 Gene3D - 187 380 IPR023393 -
Cca09g01996 848 ProSiteProfiles START domain profile. 159 360 IPR002913 GO:0008289
Cca09g01996 848 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 2 848 - -
Cca09g01996 848 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 2 848 IPR044830 GO:0003700
Cca09g01996 848 CDD START_ArGLABRA2_like 163 379 - -
Cca09g01996 848 SMART HOX_1 18 84 IPR001356 GO:0003677
Cca09g01996 848 CDD bZIP 73 112 - -
Cca09g01996 848 SUPERFAMILY Homeodomain-like 21 83 IPR009057 -
Cca09g01996 848 CDD homeodomain 21 81 IPR001356 GO:0003677
Cca09g01996 848 Coils Coil 90 110 - -
Cca09g01996 848 ProSiteProfiles 'Homeobox' domain profile. 24 80 IPR001356 GO:0003677
Cca09g01996 848 Pfam MEKHLA domain 703 847 IPR013978 -
Cca09g01996 848 Gene3D - 13 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01996 Cca-Chr9 44979365 44986275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01996 1 848 Homeobox Transcription Factor Family AT2G34710 77.400 0.0 1359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca09g01996 START 7.9e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01996 K09338 - gmx:100807637 1607.42