Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01994 ATGACCTCTGCTCACGACCTTACTGATAATGAAGATGATGGGCAGCAGCAGTCAGAATCCCAAATGCAGTCCCCATCTGCAAATGGAATTTCGGATCCAGGTATTAGTAACCAGATTGTCAATGTACAGTATGCAACACCTAGCCAGCTTGGAACTGGGCATGCAATGGTACCAGCTGTATATCCATATCCAGATCCTTATTATAGAAGCATCTTTGCAACCTATGATACCCAAACTTATCCCCCACAAGCCTATAGTGGACAGCCAATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTGCCAACTGATGCAGTTGAGGAGCCGGTGTTTGTCAATGCAAAGCAATATCGTGGTATATTAAGACGCAGACAATCCCGTGCAAAAGCTGAATCAGAAAAGAAAGTTACAAGGAATAGGAAGCCATACTTGCACGAATCTCGACACATTCATGCACTGAGAAGACCAAGAGGATGTGGTGGTCGGTTTCTGAATTCAAAGAAAGACGAGAATCAGCAAAATGATGTGGCATCAGCTGACAAATCACAATCCAATATCAATCTCAATTCTGATAAAAATGATCTTAATTCATCATCAGATAGGACATCCTAA 624 0.4263 MTSAHDLTDNEDDGQQQSESQMQSPSANGISDPGISNQIVNVQYATPSQLGTGHAMVPAVYPYPDPYYRSIFATYDTQTYPPQAYSGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYRGILRRRQSRAKAESEKKVTRNRKPYLHESRHIHALRRPRGCGGRFLNSKKDENQQNDVASADKSQSNINLNSDKNDLNSSSDRTS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01994 207 MobiDBLite consensus disorder prediction 129 207 - -
Cca09g01994 207 SMART cbf3 109 170 IPR001289 GO:0003700|GO:0006355
Cca09g01994 207 MobiDBLite consensus disorder prediction 1 35 - -
Cca09g01994 207 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 2 190 - -
Cca09g01994 207 MobiDBLite consensus disorder prediction 170 207 - -
Cca09g01994 207 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 112 167 IPR001289 GO:0003700|GO:0006355
Cca09g01994 207 ProSiteProfiles NF-YA/HAP2 family profile. 110 170 IPR001289 GO:0003700|GO:0006355
Cca09g01994 207 ProSitePatterns NF-YA/HAP2 subunit signature. 115 135 IPR018362 GO:0003677|GO:0016602
Cca09g01994 207 MobiDBLite consensus disorder prediction 129 144 - -
Cca09g01994 207 Gene3D - 110 171 - -
Cca09g01994 207 MobiDBLite consensus disorder prediction 145 160 - -
Cca09g01994 207 MobiDBLite consensus disorder prediction 14 35 - -
Cca09g01994 207 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 190 IPR001289 GO:0003700|GO:0006355
Cca09g01994 207 PRINTS CCAAT-binding transcription factor subunit B signature 113 135 IPR001289 GO:0003700|GO:0006355
Cca09g01994 207 PRINTS CCAAT-binding transcription factor subunit B signature 144 167 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01994 Cca-Chr9 44950193 44955595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01994 2 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 54.902 2.59e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Cca09g01994 CBFB_NFYA 7.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01994 K08064 - gmx:100499754 336.65