Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01992 ATGAGTGATAAGGAATTTGGGAGGCCTCTCTCAGGTAAAAGAAGATTGAAGGATTTATTGCTTCAAAAAGATAATCAGTTTTGTGCTGATTGTAACGCTCCAGATCCTAAATGGGCGTCGGCCAATATTGGAGTTTTTCTGTGCTTAAAATGCTGTGGTGTGCACAGAAGTCTTGGCTCTCATATATCCAAGGTTTTGTCTGTGACATTGGATGAATGGTCAGATGAGGAACTAGATGCAATGATGGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTATCTTCCACAAGGATTTACAAAACCTGGACCAGATGCCAGTCATGAGCAGCGTACAAAATTCATCCGATCAAAGTATGAGCGTCAAGAATTTTTGAAATCTAGTTTGCGCATTGTGTCGGGAACAGGCAATAATGTTCGATCAAATGTTTCCCAAGTAGGGACTGTGAATAGTTTACGAAGTACTAGTGATTCACAGAACACGGAAGGAAAGCTTGGAACGTTGAAGGTGAAAGTGATCAAAGGCACGGATTTAGCTATCAGAGATATGTTGACAAGTGATCCATATGTTATCTTGAAACTTGGCCAACAGACTGTTCAGACAACTGTGGTGAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCGGCAATTTGGACTATTGAATTTGAATGTATTTGATTATGACATGTTTTCAGCTGATGATATAATGGGGGAAGCAGATATTGATCTTCAGCCTCTGATTTCATCTGCAATTTCATTTGGAGATGCTAGTATGTTTGATGATATGCAGATAGGAAAATGGCTGAAATCCCATAACAATGCGCTTATAGATGATAGCATAGTCAATATTGTTGATGGTAAGATTAAACAAGAGATGACCATCAAGCTCCAGAACGTCGAATCTGGAGAATTAGACTTAGAACTCGAGTGGCTACCTCTTGCTAAATAG 978 0.3937 MSDKEFGRPLSGKRRLKDLLLQKDNQFCADCNAPDPKWASANIGVFLCLKCCGVHRSLGSHISKVLSVTLDEWSDEELDAMMEVGGNSSANSIYEAYLPQGFTKPGPDASHEQRTKFIRSKYERQEFLKSSLRIVSGTGNNVRSNVSQVGTVNSLRSTSDSQNTEGKLGTLKVKVIKGTDLAIRDMLTSDPYVILKLGQQTVQTTVVKSNLNPVWNEELMLSVPRQFGLLNLNVFDYDMFSADDIMGEADIDLQPLISSAISFGDASMFDDMQIGKWLKSHNNALIDDSIVNIVDGKIKQEMTIKLQNVESGELDLELEWLPLAK 325
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01992 325 Gene3D Arf GTPase activating protein 6 134 IPR038508 -
Cca09g01992 325 CDD ArfGap 16 122 - -
Cca09g01992 325 Pfam Putative GTPase activating protein for Arf 14 129 IPR001164 GO:0005096
Cca09g01992 325 ProSiteProfiles C2 domain profile. 151 268 IPR000008 -
Cca09g01992 325 SMART C2_3c 170 265 IPR000008 -
Cca09g01992 325 Gene3D C2 domain 164 325 IPR035892 -
Cca09g01992 325 Pfam C2 domain 169 259 IPR000008 -
Cca09g01992 325 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 168 322 IPR035892 -
Cca09g01992 325 SMART arf_gap_3 13 135 IPR001164 GO:0005096
Cca09g01992 325 CDD C2_ArfGAP 168 312 - -
Cca09g01992 325 ProSiteProfiles ARF GTPase-activating proteins domain profile. 13 127 IPR001164 GO:0005096
Cca09g01992 325 SUPERFAMILY ArfGap/RecO-like zinc finger 13 129 IPR037278 -
Cca09g01992 325 PRINTS HIV Rev interacting protein signature 25 44 IPR001164 GO:0005096
Cca09g01992 325 PRINTS HIV Rev interacting protein signature 44 61 IPR001164 GO:0005096
Cca09g01992 325 PRINTS HIV Rev interacting protein signature 65 86 IPR001164 GO:0005096
Cca09g01992 325 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 6 324 - -
Cca09g01992 325 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 6 324 IPR044518 GO:0005096|GO:0005543
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Cca09g01992 Cca-Chr9 44935247 44941306 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01992 6 325 C2H2 Transcription Factor Family AT4G21160 70.091 1.34e-175 488