Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01989 ATGGATTCTGGTTTGAGCAAGGCACATAGTTCTCTCGAAAATGAAATAGAGGGAACATCATCAAAAATAGATGAAGATTCATACAAGGAGTTGTCTACTTTGGTGAGGATAAGGGATTTTATCATGCTCTTGTTGACTTATCCAATGAAATTAGATGAGGAAGATATATTGAAATCCTGGATTGGTGCATTTTCTGAATGGAAAACTCAGTTATTGTCCATGGATGGTGATACTGCGATGGAAAAACCATGGCATGAACCAACTAAGAAGGTATTGAGACGTATGCAAGGATTTATGCCAAGGGGTATAATAAGTCAAATAGAACGTGGTGAGAGATCCATCTGCAAACATAATAATGATTTAACACCAGAAGCCATTCTCCATATGACTGTTGATCTCGCAGTTAACCAGCTAATTCAGACTTTGTTTTCGAGAGATTATTCTGAATGCTATGTCAGGATGTTAACCACAAACTTGATTGAGAAAAGATCTGTTTTGAATAAAATAGTAGCAGCCTTGGAAGAGAAGAAGCACTACACGTTTGGTACTGACAAAGATTTTCTCAGACCCCTATGGATCAATGCCTCAACATATGAGAGTGATGCAGAGGTTCGAGTTCAAGAAGAGATTAATACAATGATGGCAGCAGGTTTTTCTGCGACAAGCACTAGGCATTTGGTGATTGTAGTGGATGCTGACAGCAACAAGAAGTTGGACCTCCAAAAAGTGCATTTTCCAACTGGAATTGTGGTGTTGATAACAAATGAACCATTAACACAAGCAGATAAGGATGATGACTTTAGAATGACATGCACAATGGACTTGAATATTAGGATCCATGATCATCTGTTGCCTTGGGAAGTCTTTTGCAGCTATGTGGGCAATATCAATGTACATTCTTCATCAATGGCCTTTCAGAGAATTGCAGTGCAAATAGTTGAAGAATGCCATGGTCATCTTTTTGCCATTGTCCTTGTGGCAAATTACTTGAAAAATGTGAAAGATGTTAAAGACTGGGAACTTGCACTTACCAAATTAAGCAGCCTGAATTATTTCTATGATTATCAAGGTAGTGACCGAATTGGCATTTATAGGGTAATGGTCAATGCATTGCTAAATATTATATGGGAAGACATTGATGATACACGAAAGATGTGCCTTGAAATCAGTTTGTTTGTTCACAACATTAAAATTGGGGTGACAAAAGCAATCTTAGTGTCAAATTGGGAAAATATATATGCTGAATTCATTACGCAAGCACGTTATGACTTCTTAAAGCTTGCAGACTGTTTTGTCTTGTTGAAAAATGAAAATGATGATGTCTATTTGCCAATAGAAACTTATGATATAATAAATTCATTACACACCTCGAATCCTTCCATCATAAGACATGTTGCAGCAGGATTGACGGAACCACCTCACATTGGACGATGGCATGGCCTTATTCGGATGGAATTGATGGACAATAAAATATGTGAGCTACCGCAATCACCAAAATGTCCTAAACTCAAAGTATTGTGGTTACAGGGCAATGTTGATTTAATGGATATCCCTGACTCATTTTTCAACCACATGCCTCTGCTACGACACTTAGACTTATCCTATACTAGTATAAGGAATTTGCCTCTTTCTTTCTTTAAATTAATACAACTTCGGAAATTTTATCTTAGAGGTTGTGATCTCTTCATGGAACTACCACCGGAAATCAGACATTTGAAGAATCTTGAAGAGCTTGATCTTGAAGGGACTTTGATTACCCATTTGCCAAAAGAGGTCGGAGAACTGATGAAACTGCAAAGCTTAACCGCCAGCTTTGATGAATACCATCATGGCAAAAAAGAAGAGCAAATTTCTAACTCAATAATTCCTCCAGGTGTGATATCAAATCTTGCTTTGTTGAATTGTTTAAGCATCAATGTTGACCCTGGAGATGAGCGATGGAATGAGAATGTTACTAGTGTTTTGATGGAAATTTTTGGATCAAACACGTTGGAGACGGTGAATATATATGTCCCAAGGGCTGAACTTCTGGAATGCATTCCCTCCACAAGATTCCTCAATTTCAAATTGGTTGTTGGTCATCATGTGAAACGGTTCATATCGCGTGTAACACCTGAATTGGAGCAAAAATTCAAAAATTGTGACTATAGTATAAAGTTTGTTAATGGTGTAAATGTTCCAAATGGAGTGAAAATGAATCTTGGACATTTCAAGGCCTTGTACCTAGACCGACATATGACCATCAAAAGTCTATCTGATTTTGAGTTGAGGAATTTATCTGGGCTACAAGTATGCATATTGGCGGAATGTAATGAAATGGAAACAATTGTACATGGAAATAACTTACATGATGAGCTAGCTCTTCCAAAATTGCAGTTTTTGAGTGTATTCTATATGAAGAATTTAAGAAGCATTCGGGAAGGGTCTAGTCTCTCCTTTTTCCACTTAAAATCTATAGCATTGCACACTTGTCCCATGTTAACTACCATTTTCACATCAGATTCTTTGAACACGCTTTTCTTTTTAGAGGAGATTATTGTTGAAGATTGTCCAAAAGTAACCACCCTGATAAGCCATGACTCATCAGAACAAAAATCAATGTTTCACCTTCCCAAGTTGAGAAGAGTGTTACTTTTGTATCTTCCTGAGTTGGTCAACATTTTTAATGGCCTGTGTGCTGAACACAAGTTACAAGAAATGGTATTTTATTATTGTCCAAAACTCCAAAGTTTTTCGAAATGGGAGTTGTCAAGCAAATCTTTGAAGATTATCAAAGGAGAAAGCATATGGTGGGAAACATTGAAATGGAATGCAGCTGAGTGGGAAGATGTTGGTGGACCAAAATTTTTTGATCATTTTTTTTCACCAATTAATGAGGTGAGTGACATGATGATCCAACTTGGTGCACATCAAGAGACTCAACTAAGTACATTTCTCGATGAGAATAAGTTACAGAGAAAAAGAAAGAAATTTGTTCCACTCGAAGGTCCACACCCACCATCTCTGAGAATAGGCAAAGAATCTGACACATTTGGGCTTAGAAAGTCGCGTAAGGCCGCTAAGACTCAGACATTTTCTATAAACACAACCGTCGGTGAATTCGGGAACCTGGTTCGGCACTACACTGGACAACGACAATCCTTGAGTGAAAAAACAAGTTTTTCAGACAAGGAAAGCATTGAGGGTGAAGTGGATGACATAACACACATCGTACAAGATATGACATgtggtggtgttgagtag 3243 0.374 MDSGLSKAHSSLENEIEGTSSKIDEDSYKELSTLVRIRDFIMLLLTYPMKLDEEDILKSWIGAFSEWKTQLLSMDGDTAMEKPWHEPTKKVLRRMQGFMPRGIISQIERGERSICKHNNDLTPEAILHMTVDLAVNQLIQTLFSRDYSECYVRMLTTNLIEKRSVLNKIVAALEEKKHYTFGTDKDFLRPLWINASTYESDAEVRVQEEINTMMAAGFSATSTRHLVIVVDADSNKKLDLQKVHFPTGIVVLITNEPLTQADKDDDFRMTCTMDLNIRIHDHLLPWEVFCSYVGNINVHSSSMAFQRIAVQIVEECHGHLFAIVLVANYLKNVKDVKDWELALTKLSSLNYFYDYQGSDRIGIYRVMVNALLNIIWEDIDDTRKMCLEISLFVHNIKIGVTKAILVSNWENIYAEFITQARYDFLKLADCFVLLKNENDDVYLPIETYDIINSLHTSNPSIIRHVAAGLTEPPHIGRWHGLIRMELMDNKICELPQSPKCPKLKVLWLQGNVDLMDIPDSFFNHMPLLRHLDLSYTSIRNLPLSFFKLIQLRKFYLRGCDLFMELPPEIRHLKNLEELDLEGTLITHLPKEVGELMKLQSLTASFDEYHHGKKEEQISNSIIPPGVISNLALLNCLSINVDPGDERWNENVTSVLMEIFGSNTLETVNIYVPRAELLECIPSTRFLNFKLVVGHHVKRFISRVTPELEQKFKNCDYSIKFVNGVNVPNGVKMNLGHFKALYLDRHMTIKSLSDFELRNLSGLQVCILAECNEMETIVHGNNLHDELALPKLQFLSVFYMKNLRSIREGSSLSFFHLKSIALHTCPMLTTIFTSDSLNTLFFLEEIIVEDCPKVTTLISHDSSEQKSMFHLPKLRRVLLLYLPELVNIFNGLCAEHKLQEMVFYYCPKLQSFSKWELSSKSLKIIKGESIWWETLKWNAAEWEDVGGPKFFDHFFSPINEVSDMMIQLGAHQETQLSTFLDENKLQRKRKKFVPLEGPHPPSLRIGKESDTFGLRKSRKAAKTQTFSINTTVGEFGNLVRHYTGQRQSLSEKTSFSDKESIEGEVDDITHIVQDMTCGGVE 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01989 1080 SUPERFAMILY L domain-like 469 913 - -
Cca09g01989 1080 SMART LRR_typ_2 525 548 IPR003591 -
Cca09g01989 1080 SMART LRR_typ_2 572 595 IPR003591 -
Cca09g01989 1080 Gene3D - 285 357 IPR042197 -
Cca09g01989 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 387 IPR027417 -
Cca09g01989 1080 Pfam Leucine rich repeat 501 561 IPR001611 GO:0005515
Cca09g01989 1080 Gene3D Ribonuclease Inhibitor 722 929 IPR032675 -
Cca09g01989 1080 PANTHER PROTEIN LAP1-LIKE 161 944 - -
Cca09g01989 1080 PANTHER - 161 944 - -
Cca09g01989 1080 Gene3D Ribonuclease Inhibitor 433 659 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01989 Cca-Chr9 44902977 44915081 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01989 501 601 WRKY Transcription Factor Family AT4G12020 36.275 3.02e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01989 - - ccaj:109797513 2176.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01989 09 44902977 44915081 Cca09g01989 09 44902977 44915081 ECH