Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01965 ATGCCTCGTAAAGTGAACTACGGACTCGATTacgacgacgattactacgatgacgaagactatgacgattatgagtatgatatcgatGCAGAACACCATGGAGGAGCTGATACAAAGCAAGAGACTGTAACACCCGGGCTTTGGCAATGCTCCATTTGCACTTATGACAATGATGAGAGTATGACTTCGTGTGATATTTGTGGTGTTGTACGTCATCCCTTGCTTAACATTGGAACTTCCAACAGTAGCAAAACAGATTCATTCAAGTTCGATGTTCCATCCCCAGATGATGTGGTTTATTCTGGTCTACATTCTTCCAAAATGGGTTTGAAAGACAAAGTTACAAACTCTAAAAGTTCTCAGCTTTCATCGAGCATCAGAGAGAAGAATGAACTGTCTGTACAATCAAATGTTGAAAGTTTAGAAAACTTATCATCCTTAATGCGAAAGAGCAAACAGGAAAGTTCAGCAGTGAGCAAGCTTTCTAAAAATGTAGCAATTGATCTACAAATAAGTGGTAAAACTTTAAACAGCTTGCCAGAATCTTTGTCAAAAGACAAAGGCAACAATATTAATAAAATAAATTCTTCGAAGAATGGTACAATTGATATTCAATCAAGCAAAGAAAAGTCAGGTAGCTTGTCTGCATCGACAAAAATCAAGGAAAGTGATAAGATTAGTTTGTCTTCAATCAAAGATGGAAAACCTGAAAGTAATTCCAGCAGTTTCAACAATATGGTTCTTGATGTAAGGTCTGGAAATTCAAGTAGTACTAATGCTAAGGGATCACATTCACATGTTTCTTTTAAGCCAGAAAAATGGATGCTCCCTCAACAAGCTGAAGATACATTGACTCAGCTAAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACTCTATCTGGTAGGTTACTACACCTATTGGGACGAATTTCCCAGAAAGAAATGCACAAATATGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCTTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGAGAAAGGGGAATAACTATGACAGTGGCTGTTGCTTATTTTGACACCAAGAGATATCATGTTGTTGTGCTTGACTCCCCAGGCCATAAAGATTTTGTACCAAACATGATTTCTGGGGCAACACAAGCTGATGCTGCAATTCTTGTTATAGATGCTTCACTTGGTTCATTTGAAGCTGGTATGGATGGCAACAAAGGTCAAACAAGGGAGCATGCACAACTTATCAGAAGCTTTGGTGTTGACCGGGTTATAGTTGCTATAAATAAGATGGATGCTGTTGAGTACTCCAAAGATCGATTTGATTTTATAAGGCAGCAGCTGGGAGTTTTTCTTCATTCATGTGGTTTCAAAGCCTCTTCTGTATCTTGGATTCCCATGAGTGCCATGGAAAATCAAAATTTGGTGGCATCCCCTTCCGATGCTCGGTTCAAAAACTGGTATGGTGGACCTTATCTGTTAGATGCAATTGACTCTCTCAAACCTCCTACAAGAGATTTCTCAAAACCTCTACTAATGCCAATATGCGATGTCATTAAATCAACTATGCTTGGACAGGTGTCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCAAAGGTCTTAGTTATGCCTTCAGCTGTTGTGGGAACAGTACGCTCATTGGAGCGTGATTCTAATGCCTGCACTGTTGCAAGAGCTGGAGATAATGTAGCTGTAACGTTGCAAGGTGTTGATGGGAGTCATGTGATGGCGGGAGGTGTACTCTGCCATCCTGACTTTCCTGTTGCAATTGCTAAGCATTTGGAGTTGAAAGTGCTAGTTTTGGATGGTGCAAGTCCCATATTGATGGGTGCTCAGTTAGAGTTTCATATACACCATGCAAAGGAACCCGCTAGAGTTTCAAGAATATTGTCATTACTTGATCCCAAGACTGGTAAGATAACCAAAAAGTCGCCTCGCTGTCTCACTGCTAAGCAAAGTGCAGTAATTGAGGTGATTTTGAATGAGTCTGTTTGTGTGGTGGAGTTCTCTACTTGTAAAGCTCTTGGAAGGGTGTCCCTAAGATCATTGGGAAGAACAATTGCTGTTGGAGTTGTGACAAGAATAATTGAAGAACAAGGTTAG 2148 0.3934 MPRKVNYGLDYDDDYYDDEDYDDYEYDIDAEHHGGADTKQETVTPGLWQCSICTYDNDESMTSCDICGVVRHPLLNIGTSNSSKTDSFKFDVPSPDDVVYSGLHSSKMGLKDKVTNSKSSQLSSSIREKNELSVQSNVESLENLSSLMRKSKQESSAVSKLSKNVAIDLQISGKTLNSLPESLSKDKGNNINKINSSKNGTIDIQSSKEKSGSLSASTKIKESDKISLSSIKDGKPESNSSSFNNMVLDVRSGNSSSTNAKGSHSHVSFKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKRYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGNKGQTREHAQLIRSFGVDRVIVAINKMDAVEYSKDRFDFIRQQLGVFLHSCGFKASSVSWIPMSAMENQNLVASPSDARFKNWYGGPYLLDAIDSLKPPTRDFSKPLLMPICDVIKSTMLGQVSACGKLEAGALRSGSKVLVMPSAVVGTVRSLERDSNACTVARAGDNVAVTLQGVDGSHVMAGGVLCHPDFPVAIAKHLELKVLVLDGASPILMGAQLEFHIHHAKEPARVSRILSLLDPKTGKITKKSPRCLTAKQSAVIEVILNESVCVVEFSTCKALGRVSLRSLGRTIAVGVVTRIIEEQG 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01965 715 Gene3D - 40 83 - -
Cca09g01965 715 CDD HBS1_C_III 602 710 - -
Cca09g01965 715 Gene3D Translation factors 605 714 - -
Cca09g01965 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 286 529 IPR027417 -
Cca09g01965 715 Pfam Elongation factor Tu GTP binding domain 287 503 IPR000795 GO:0003924|GO:0005525
Cca09g01965 715 PANTHER OS04G0595300 PROTEIN 98 713 - -
Cca09g01965 715 SMART zf_4 46 70 IPR001876 -
Cca09g01965 715 SUPERFAMILY Translation proteins 506 601 IPR009000 -
Cca09g01965 715 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 607 711 IPR009001 -
Cca09g01965 715 ProSiteProfiles Zinc finger RanBP2 type profile. 44 73 IPR001876 -
Cca09g01965 715 SUPERFAMILY Ran binding protein zinc finger-like 45 71 IPR036443 -
Cca09g01965 715 PANTHER TRANSLATION FACTOR 98 713 - -
Cca09g01965 715 ProSitePatterns Zinc finger RanBP2-type signature. 48 67 IPR001876 -
Cca09g01965 715 MobiDBLite consensus disorder prediction 114 135 - -
Cca09g01965 715 Pfam Elongation factor Tu C-terminal domain 606 710 IPR004160 -
Cca09g01965 715 CDD EF1_alpha 288 507 - -
Cca09g01965 715 Gene3D Translation factors 512 601 - -
Cca09g01965 715 MobiDBLite consensus disorder prediction 178 219 - -
Cca09g01965 715 PRINTS GTP-binding elongation factor signature 288 301 IPR000795 GO:0003924|GO:0005525
Cca09g01965 715 PRINTS GTP-binding elongation factor signature 347 355 IPR000795 GO:0003924|GO:0005525
Cca09g01965 715 PRINTS GTP-binding elongation factor signature 367 377 IPR000795 GO:0003924|GO:0005525
Cca09g01965 715 PRINTS GTP-binding elongation factor signature 383 394 IPR000795 GO:0003924|GO:0005525
Cca09g01965 715 PRINTS GTP-binding elongation factor signature 428 437 IPR000795 GO:0003924|GO:0005525
Cca09g01965 715 MobiDBLite consensus disorder prediction 225 244 - -
Cca09g01965 715 Gene3D - 275 508 IPR027417 -
Cca09g01965 715 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 284 515 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01965 Cca-Chr9 44639572 44651787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01965 44 713 Eukaryotic Initiation Factors Gene Family AT5G10630 60.597 0.0 794
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01965 K14416 - gmx:100798594 1212.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02239 08 55881459 55884906 Cca09g01965 09 44639572 44651787 PCT