Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01964 ATGGGAATTCAGGGATTTCTACCGCTTTTGAAATCGATTATGGTTCCAATCCACATCAAGGACTTGAAGGGTTCTTCCGTAGCTGTAGACACCTACTCTTGGCTCCACAAAGGTGCCCTCTCTTGCAGCACCGAACTCTGCAAAGGGATACCCACTACTAGGCACATTGAGTATTGCATGCACAGAGTAAACTTGCTGCGCCATTTTGGGGTTAAGCCTGTTCTAGTGTTTGATGGAGGACTTCTGCCAATGAAGAGTGACCAAGAGAACAAGCGTGCTAGGGCTAGGAAGGATAATTTTGCACGTGCAGTTGTGCATGAGTCAGATGGAAATTCATCTGCTGCCTATGAGTGCTACCAGAAAGCAGTTGATATTTCACCTCAAGTTGCACGTGAACTAATTCAGGTATTGAAGCAGGAGAACGTGCAGTATGTTGTTGCTCCTTATGAGGCAGATGCCCAGATGACATTCTTGGCAATAAGTGGACAAGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGCCCAAGAATTATATTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAATATTCCATGCTACAAAAGAATAAGGAGCTCAGTTTTGAAGGGTTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCAATCCTTGCCAGGTATGGGTCTCAAAAGGGCCCATTCAAGCATTAAAAAGTTTAGAAGTTATGATAAGGTTCTTAAGCACCTGAGATACAGTGGAGTTTCTGTGCCGCCATTTTATGAAGAATCATTCAAGAAGGCTATACTTACGTTCCAATATCAACGGGTGTACGATCCAATTAATGAAAATATTGTCCATTTGTCTAATATACCTGATGATATTGGTGATGAGTTAGATTTTTTAGGCCCACCCTTGCCAAAAGATATAGCACAAAGAATAGCAAAAGGGGATCTTGATCCAATTACCAAAATGCCATTTGAGGGAGATACTCATGCAGCCAGATTGGCAATTACCGGAACTAGTCAATTCAAAATTCCTCATTCTGAAAATGCAAAGAAAAAGATTGATTTGCCCGTGCAGAAGAATCTCTTGACGAAGTATTTTTGTTTTGCATCTCTTGAAGCGAAAAGGAAATTCAGAGCACCTCGGGTGTCACCTACTGCTGCTAATGAAACAAAGAACTCTACTGCATCTATAATTGACTCTGAGAATTGGGATAATGTCCCTCCTCCTATTAGCCATATTGAATATGGTTCTGCCACAAAAAATTCTGAATTTACAGGGTCTCCATCTCATGTTTCCATGGTGGGCGAGGAGAAGAAAAACCCTGAACATACAGTACTGCGACAGCCCAGGCAGCCAATTCATAAACCGTGTCTGGGGTTGCATAAGGAGCATGAGCACACAAATTTCCAAGACACATTTGAAGGAACAACCAGGCAGGCAATAAGAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCACAAACAAGTAGAAAAGAATGTTTGTGACGAGAAACAAGATCGACTGTCCTCTGGCATTGTCATTGATGAGAGAGAAAATGCCATACCTGACAGTCATTTATGCAACAACCATTTGAAGAATAAAGATCAGAGAGTCCAAGGCACAGGTGAAGGAAAAACCAGGGAGGCAACGAGAAAGGTAACTGTAAGGAGTGCATACTTTCAGCACAAGCAAGTAGAAAATAATACTTCTGACGAGAAACAAGATCGACTGTTCTCTGGCATTGTCATTGACGAGAGAAAAAATGCCATATCTGACAGTGATTTATGTAACAACCATTTGAAGAATAAAGATCTGAAAAGGAAGATATCCCCTAATGACAATATTCAAAATGGAAATTTACAGCCCAGGCCAATGCACCATGTTTCACCTCCTCATAATAATGGTTGCTGTGATCACAATGTTGACCAGCCATTTACAGAGAATAATGCTGAAGAAGAAAAATTTGGGACAAACATTTCCCATCTGGGCCAGTATTCAGAAATAGCTGAGAAGTCTATGGAAAAATTTGTCTCTGTGATATCATCCTTTAGATGCACTTCTGGCACTCGTGTCAGTGGTCTCCGTGCTCCTCTGAAAGATGTTCAAAACACTTCTGATAATAGGCCAAAAACTGTGGACTTTGGACAATATGCATATGTGCCAAAACAAACAAAGACTAGAAGAATAGCTCCCGGGAATTAA 2229 0.4078 MGIQGFLPLLKSIMVPIHIKDLKGSSVAVDTYSWLHKGALSCSTELCKGIPTTRHIEYCMHRVNLLRHFGVKPVLVFDGGLLPMKSDQENKRARARKDNFARAVVHESDGNSSAAYECYQKAVDISPQVARELIQVLKQENVQYVVAPYEADAQMTFLAISGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLQKNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKRAHSSIKKFRSYDKVLKHLRYSGVSVPPFYEESFKKAILTFQYQRVYDPINENIVHLSNIPDDIGDELDFLGPPLPKDIAQRIAKGDLDPITKMPFEGDTHAARLAITGTSQFKIPHSENAKKKIDLPVQKNLLTKYFCFASLEAKRKFRAPRVSPTAANETKNSTASIIDSENWDNVPPPISHIEYGSATKNSEFTGSPSHVSMVGEEKKNPEHTVLRQPRQPIHKPCLGLHKEHEHTNFQDTFEGTTRQAIRKVIVRSAYFQHKQVEKNVCDEKQDRLSSGIVIDERENAIPDSHLCNNHLKNKDQRVQGTGEGKTREATRKVTVRSAYFQHKQVENNTSDEKQDRLFSGIVIDERKNAISDSDLCNNHLKNKDLKRKISPNDNIQNGNLQPRPMHHVSPPHNNGCCDHNVDQPFTENNAEEEKFGTNISHLGQYSEIAEKSMEKFVSVISSFRCTSGTRVSGLRAPLKDVQNTSDNRPKTVDFGQYAYVPKQTKTRRIAPGN 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01964 742 MobiDBLite consensus disorder prediction 394 410 - -
Cca09g01964 742 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Cca09g01964 742 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Cca09g01964 742 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Cca09g01964 742 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Cca09g01964 742 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 335 IPR036279 -
Cca09g01964 742 Gene3D - 1 207 - -
Cca09g01964 742 MobiDBLite consensus disorder prediction 392 459 - -
Cca09g01964 742 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Cca09g01964 742 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Cca09g01964 742 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Cca09g01964 742 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Cca09g01964 742 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Cca09g01964 742 PANTHER EXONUCLEASE 1 1 715 IPR032641 GO:0006281|GO:0035312
Cca09g01964 742 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 715 IPR006084 -
Cca09g01964 742 Gene3D - 209 281 - -
Cca09g01964 742 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Cca09g01964 742 SMART xpgn3 1 99 IPR006085 GO:0004518
Cca09g01964 742 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Cca09g01964 742 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Cca09g01964 742 MobiDBLite consensus disorder prediction 444 458 - -
Cca09g01964 742 MobiDBLite consensus disorder prediction 424 438 - -
Cca09g01964 742 SMART xpgineu 138 208 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01964 Cca-Chr9 44628928 44636111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01964 1 264 Core DNA Replication Machinery Family AT5G26680 27.798 2.42e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01964 K10746 - gmx:100798062 1337.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01964 09 44628928 44636111 Cca09g01964 09 44628928 44636111 ECH