LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g01964	ATGGGAATTCAGGGATTTCTACCGCTTTTGAAATCGATTATGGTTCCAATCCACATCAAGGACTTGAAGGGTTCTTCCGTAGCTGTAGACACCTACTCTTGGCTCCACAAAGGTGCCCTCTCTTGCAGCACCGAACTCTGCAAAGGGATACCCACTACTAGGCACATTGAGTATTGCATGCACAGAGTAAACTTGCTGCGCCATTTTGGGGTTAAGCCTGTTCTAGTGTTTGATGGAGGACTTCTGCCAATGAAGAGTGACCAAGAGAACAAGCGTGCTAGGGCTAGGAAGGATAATTTTGCACGTGCAGTTGTGCATGAGTCAGATGGAAATTCATCTGCTGCCTATGAGTGCTACCAGAAAGCAGTTGATATTTCACCTCAAGTTGCACGTGAACTAATTCAGGTATTGAAGCAGGAGAACGTGCAGTATGTTGTTGCTCCTTATGAGGCAGATGCCCAGATGACATTCTTGGCAATAAGTGGACAAGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGCCCAAGAATTATATTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAATATTCCATGCTACAAAAGAATAAGGAGCTCAGTTTTGAAGGGTTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCAATCCTTGCCAGGTATGGGTCTCAAAAGGGCCCATTCAAGCATTAAAAAGTTTAGAAGTTATGATAAGGTTCTTAAGCACCTGAGATACAGTGGAGTTTCTGTGCCGCCATTTTATGAAGAATCATTCAAGAAGGCTATACTTACGTTCCAATATCAACGGGTGTACGATCCAATTAATGAAAATATTGTCCATTTGTCTAATATACCTGATGATATTGGTGATGAGTTAGATTTTTTAGGCCCACCCTTGCCAAAAGATATAGCACAAAGAATAGCAAAAGGGGATCTTGATCCAATTACCAAAATGCCATTTGAGGGAGATACTCATGCAGCCAGATTGGCAATTACCGGAACTAGTCAATTCAAAATTCCTCATTCTGAAAATGCAAAGAAAAAGATTGATTTGCCCGTGCAGAAGAATCTCTTGACGAAGTATTTTTGTTTTGCATCTCTTGAAGCGAAAAGGAAATTCAGAGCACCTCGGGTGTCACCTACTGCTGCTAATGAAACAAAGAACTCTACTGCATCTATAATTGACTCTGAGAATTGGGATAATGTCCCTCCTCCTATTAGCCATATTGAATATGGTTCTGCCACAAAAAATTCTGAATTTACAGGGTCTCCATCTCATGTTTCCATGGTGGGCGAGGAGAAGAAAAACCCTGAACATACAGTACTGCGACAGCCCAGGCAGCCAATTCATAAACCGTGTCTGGGGTTGCATAAGGAGCATGAGCACACAAATTTCCAAGACACATTTGAAGGAACAACCAGGCAGGCAATAAGAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCACAAACAAGTAGAAAAGAATGTTTGTGACGAGAAACAAGATCGACTGTCCTCTGGCATTGTCATTGATGAGAGAGAAAATGCCATACCTGACAGTCATTTATGCAACAACCATTTGAAGAATAAAGATCAGAGAGTCCAAGGCACAGGTGAAGGAAAAACCAGGGAGGCAACGAGAAAGGTAACTGTAAGGAGTGCATACTTTCAGCACAAGCAAGTAGAAAATAATACTTCTGACGAGAAACAAGATCGACTGTTCTCTGGCATTGTCATTGACGAGAGAAAAAATGCCATATCTGACAGTGATTTATGTAACAACCATTTGAAGAATAAAGATCTGAAAAGGAAGATATCCCCTAATGACAATATTCAAAATGGAAATTTACAGCCCAGGCCAATGCACCATGTTTCACCTCCTCATAATAATGGTTGCTGTGATCACAATGTTGACCAGCCATTTACAGAGAATAATGCTGAAGAAGAAAAATTTGGGACAAACATTTCCCATCTGGGCCAGTATTCAGAAATAGCTGAGAAGTCTATGGAAAAATTTGTCTCTGTGATATCATCCTTTAGATGCACTTCTGGCACTCGTGTCAGTGGTCTCCGTGCTCCTCTGAAAGATGTTCAAAACACTTCTGATAATAGGCCAAAAACTGTGGACTTTGGACAATATGCATATGTGCCAAAACAAACAAAGACTAGAAGAATAGCTCCCGGGAATTAA	2229	0.4078	MGIQGFLPLLKSIMVPIHIKDLKGSSVAVDTYSWLHKGALSCSTELCKGIPTTRHIEYCMHRVNLLRHFGVKPVLVFDGGLLPMKSDQENKRARARKDNFARAVVHESDGNSSAAYECYQKAVDISPQVARELIQVLKQENVQYVVAPYEADAQMTFLAISGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLQKNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKRAHSSIKKFRSYDKVLKHLRYSGVSVPPFYEESFKKAILTFQYQRVYDPINENIVHLSNIPDDIGDELDFLGPPLPKDIAQRIAKGDLDPITKMPFEGDTHAARLAITGTSQFKIPHSENAKKKIDLPVQKNLLTKYFCFASLEAKRKFRAPRVSPTAANETKNSTASIIDSENWDNVPPPISHIEYGSATKNSEFTGSPSHVSMVGEEKKNPEHTVLRQPRQPIHKPCLGLHKEHEHTNFQDTFEGTTRQAIRKVIVRSAYFQHKQVEKNVCDEKQDRLSSGIVIDERENAIPDSHLCNNHLKNKDQRVQGTGEGKTREATRKVTVRSAYFQHKQVENNTSDEKQDRLFSGIVIDERKNAISDSDLCNNHLKNKDLKRKISPNDNIQNGNLQPRPMHHVSPPHNNGCCDHNVDQPFTENNAEEEKFGTNISHLGQYSEIAEKSMEKFVSVISSFRCTSGTRVSGLRAPLKDVQNTSDNRPKTVDFGQYAYVPKQTKTRRIAPGN	742

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca09g01964	742	MobiDBLite	consensus disorder prediction	394	410	-	-
Cca09g01964	742	ProSitePatterns	XPG protein signature 1.	71	85	IPR019974	GO:0016788
Cca09g01964	742	SMART	HhH_4	213	246	IPR008918	GO:0003677\|GO:0003824
Cca09g01964	742	CDD	PIN_EXO1	1	202	IPR044752	GO:0046872
Cca09g01964	742	Pfam	XPG N-terminal domain	1	98	IPR006085	GO:0004518
Cca09g01964	742	SUPERFAMILY	5' to 3' exonuclease, C-terminal subdomain	211	335	IPR036279	-
Cca09g01964	742	Gene3D	-	1	207	-	-
Cca09g01964	742	MobiDBLite	consensus disorder prediction	392	459	-	-
Cca09g01964	742	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	24	38	IPR006084	-
Cca09g01964	742	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	73	92	IPR006084	-

Showing 1 to 10 of 23 entries

Previous1 2 3Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g01964	Cca-Chr9	44628928	44636111	Dispersed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g01964	1	264	Core DNA Replication Machinery Family	AT5G26680	27.798	2.42e-20	92.4

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g01964	K10746		-	gmx:100798062	1337.01

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca09g01964	09	44628928	44636111	Cca09g01964	09	44628928	44636111	ECH

Showing 1 to 1 of 1 entries

Previous1Next