Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca09g01964 | ATGGGAATTCAGGGATTTCTACCGCTTTTGAAATCGATTATGGTTCCAATCCACATCAAGGACTTGAAGGGTTCTTCCGTAGCTGTAGACACCTACTCTTGGCTCCACAAAGGTGCCCTCTCTTGCAGCACCGAACTCTGCAAAGGGATACCCACTACTAGGCACATTGAGTATTGCATGCACAGAGTAAACTTGCTGCGCCATTTTGGGGTTAAGCCTGTTCTAGTGTTTGATGGAGGACTTCTGCCAATGAAGAGTGACCAAGAGAACAAGCGTGCTAGGGCTAGGAAGGATAATTTTGCACGTGCAGTTGTGCATGAGTCAGATGGAAATTCATCTGCTGCCTATGAGTGCTACCAGAAAGCAGTTGATATTTCACCTCAAGTTGCACGTGAACTAATTCAGGTATTGAAGCAGGAGAACGTGCAGTATGTTGTTGCTCCTTATGAGGCAGATGCCCAGATGACATTCTTGGCAATAAGTGGACAAGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGCCCAAGAATTATATTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAATATTCCATGCTACAAAAGAATAAGGAGCTCAGTTTTGAAGGGTTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCAATCCTTGCCAGGTATGGGTCTCAAAAGGGCCCATTCAAGCATTAAAAAGTTTAGAAGTTATGATAAGGTTCTTAAGCACCTGAGATACAGTGGAGTTTCTGTGCCGCCATTTTATGAAGAATCATTCAAGAAGGCTATACTTACGTTCCAATATCAACGGGTGTACGATCCAATTAATGAAAATATTGTCCATTTGTCTAATATACCTGATGATATTGGTGATGAGTTAGATTTTTTAGGCCCACCCTTGCCAAAAGATATAGCACAAAGAATAGCAAAAGGGGATCTTGATCCAATTACCAAAATGCCATTTGAGGGAGATACTCATGCAGCCAGATTGGCAATTACCGGAACTAGTCAATTCAAAATTCCTCATTCTGAAAATGCAAAGAAAAAGATTGATTTGCCCGTGCAGAAGAATCTCTTGACGAAGTATTTTTGTTTTGCATCTCTTGAAGCGAAAAGGAAATTCAGAGCACCTCGGGTGTCACCTACTGCTGCTAATGAAACAAAGAACTCTACTGCATCTATAATTGACTCTGAGAATTGGGATAATGTCCCTCCTCCTATTAGCCATATTGAATATGGTTCTGCCACAAAAAATTCTGAATTTACAGGGTCTCCATCTCATGTTTCCATGGTGGGCGAGGAGAAGAAAAACCCTGAACATACAGTACTGCGACAGCCCAGGCAGCCAATTCATAAACCGTGTCTGGGGTTGCATAAGGAGCATGAGCACACAAATTTCCAAGACACATTTGAAGGAACAACCAGGCAGGCAATAAGAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCACAAACAAGTAGAAAAGAATGTTTGTGACGAGAAACAAGATCGACTGTCCTCTGGCATTGTCATTGATGAGAGAGAAAATGCCATACCTGACAGTCATTTATGCAACAACCATTTGAAGAATAAAGATCAGAGAGTCCAAGGCACAGGTGAAGGAAAAACCAGGGAGGCAACGAGAAAGGTAACTGTAAGGAGTGCATACTTTCAGCACAAGCAAGTAGAAAATAATACTTCTGACGAGAAACAAGATCGACTGTTCTCTGGCATTGTCATTGACGAGAGAAAAAATGCCATATCTGACAGTGATTTATGTAACAACCATTTGAAGAATAAAGATCTGAAAAGGAAGATATCCCCTAATGACAATATTCAAAATGGAAATTTACAGCCCAGGCCAATGCACCATGTTTCACCTCCTCATAATAATGGTTGCTGTGATCACAATGTTGACCAGCCATTTACAGAGAATAATGCTGAAGAAGAAAAATTTGGGACAAACATTTCCCATCTGGGCCAGTATTCAGAAATAGCTGAGAAGTCTATGGAAAAATTTGTCTCTGTGATATCATCCTTTAGATGCACTTCTGGCACTCGTGTCAGTGGTCTCCGTGCTCCTCTGAAAGATGTTCAAAACACTTCTGATAATAGGCCAAAAACTGTGGACTTTGGACAATATGCATATGTGCCAAAACAAACAAAGACTAGAAGAATAGCTCCCGGGAATTAA | 2229 | 0.4078 | MGIQGFLPLLKSIMVPIHIKDLKGSSVAVDTYSWLHKGALSCSTELCKGIPTTRHIEYCMHRVNLLRHFGVKPVLVFDGGLLPMKSDQENKRARARKDNFARAVVHESDGNSSAAYECYQKAVDISPQVARELIQVLKQENVQYVVAPYEADAQMTFLAISGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLQKNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKRAHSSIKKFRSYDKVLKHLRYSGVSVPPFYEESFKKAILTFQYQRVYDPINENIVHLSNIPDDIGDELDFLGPPLPKDIAQRIAKGDLDPITKMPFEGDTHAARLAITGTSQFKIPHSENAKKKIDLPVQKNLLTKYFCFASLEAKRKFRAPRVSPTAANETKNSTASIIDSENWDNVPPPISHIEYGSATKNSEFTGSPSHVSMVGEEKKNPEHTVLRQPRQPIHKPCLGLHKEHEHTNFQDTFEGTTRQAIRKVIVRSAYFQHKQVEKNVCDEKQDRLSSGIVIDERENAIPDSHLCNNHLKNKDQRVQGTGEGKTREATRKVTVRSAYFQHKQVENNTSDEKQDRLFSGIVIDERKNAISDSDLCNNHLKNKDLKRKISPNDNIQNGNLQPRPMHHVSPPHNNGCCDHNVDQPFTENNAEEEKFGTNISHLGQYSEIAEKSMEKFVSVISSFRCTSGTRVSGLRAPLKDVQNTSDNRPKTVDFGQYAYVPKQTKTRRIAPGN | 742 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca09g01964 | 742 | MobiDBLite | consensus disorder prediction | 394 | 410 | - | - | |
Cca09g01964 | 742 | ProSitePatterns | XPG protein signature 1. | 71 | 85 | IPR019974 | GO:0016788 | |
Cca09g01964 | 742 | SMART | HhH_4 | 213 | 246 | IPR008918 | GO:0003677|GO:0003824 | |
Cca09g01964 | 742 | CDD | PIN_EXO1 | 1 | 202 | IPR044752 | GO:0046872 | |
Cca09g01964 | 742 | Pfam | XPG N-terminal domain | 1 | 98 | IPR006085 | GO:0004518 | |
Cca09g01964 | 742 | SUPERFAMILY | 5' to 3' exonuclease, C-terminal subdomain | 211 | 335 | IPR036279 | - | |
Cca09g01964 | 742 | Gene3D | - | 1 | 207 | - | - | |
Cca09g01964 | 742 | MobiDBLite | consensus disorder prediction | 392 | 459 | - | - | |
Cca09g01964 | 742 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 24 | 38 | IPR006084 | - | |
Cca09g01964 | 742 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 73 | 92 | IPR006084 | - | |
Cca09g01964 | 742 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 137 | 154 | IPR006084 | - | |
Cca09g01964 | 742 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 158 | 178 | IPR006084 | - | |
Cca09g01964 | 742 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 216 | 231 | IPR006084 | - | |
Cca09g01964 | 742 | PANTHER | EXONUCLEASE 1 | 1 | 715 | IPR032641 | GO:0006281|GO:0035312 | |
Cca09g01964 | 742 | PANTHER | FLAP ENDONUCLEASE FAMILY MEMBER | 1 | 715 | IPR006084 | - | |
Cca09g01964 | 742 | Gene3D | - | 209 | 281 | - | - | |
Cca09g01964 | 742 | SUPERFAMILY | PIN domain-like | 2 | 226 | IPR029060 | - | |
Cca09g01964 | 742 | SMART | xpgn3 | 1 | 99 | IPR006085 | GO:0004518 | |
Cca09g01964 | 742 | Pfam | XPG I-region | 141 | 226 | IPR006086 | GO:0004518 | |
Cca09g01964 | 742 | CDD | H3TH_EXO1 | 214 | 285 | IPR037315 | GO:0003677|GO:0035312 | |
Cca09g01964 | 742 | MobiDBLite | consensus disorder prediction | 444 | 458 | - | - | |
Cca09g01964 | 742 | MobiDBLite | consensus disorder prediction | 424 | 438 | - | - | |
Cca09g01964 | 742 | SMART | xpgineu | 138 | 208 | IPR006086 | GO:0004518 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca09g01964 | Cca-Chr9 | 44628928 | 44636111 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca09g01964 | 1 | 264 | Core DNA Replication Machinery Family | AT5G26680 | 27.798 | 2.42e-20 | 92.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca09g01964 | K10746 | - | gmx:100798062 | 1337.01 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca09g01964 | 09 | 44628928 | 44636111 | Cca09g01964 | 09 | 44628928 | 44636111 | ECH |