Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01962 ATGGTATTGCTAGGCTGTGATACACGCATGGTCCACATAATGGACAATGGCTTACGACTTACGAGTGAAATCATCTCAAGAGATCTGCATTCTGCTAATCATCAGGCCAAGCGTATGCCAGGGAACAATTATAGCTGCATCCCTTTAACACCAAGGTCTAGATTGGAAAGGCTTCTGAGGGAAAGAGAGCTAAGGAAATCCTTCAAGTATACTCAAACAACTGAGGAAGCAAAAGATGGCAACAAAGAGGGAGAACAATTTTATGGTGATTCATGCATAAGTGAGAATGAAAATTTGGGTGTTCATAATGAGGAAGAGGCCACAGAAACGAATGCGGATGCAAGATTTTTTACAGATGAGAGACCAAGCAAACAACGTTTGTTGGTGGTAGCTAACAGGTTGCCTGTGTCTGCGGTTAGGGAGGGTGTGGACTCATATCACCTTGAAATCAGTGTAGGCGGGCTAGTCAGTGCACTTCTAGGTGTAAAGGAGTTTGATACTAGATGGATTGGATGGGCCGGTGTGAATGTGCCTGATGATGTTGGAAAGAAAGCATTGACTACAGCTTTAGCTGAAATGCGATGTATACCAGTATTTCTTGATGAGGAGATAGTTAATCAGTACTACAATGGCTACTGCAACAACATCTTATGGCCTCTATTTCATTACCTTGGCCTTCCACAAGAAGACCGACTTGCTACCACCCGAACTTTCCAATCTCAATTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTAGTAAATAAGCATTATGAGGAAGGAGATGTTGTTTGGTGCCATGATTACCACCTAATGTTCCTTCCAAAATGTTTAAAAGAATACAATGACCAAATGAAAGTTGGCTGGTTTCTCCATACACCCTTTCCTTCCTCAGAAATACATAGGACTCTACCATCCAGATCAGAGCTGTTGAGATCTGTACTTGCAGCTGACCTAGTGGGATTCCATACCTATGATTATGCAAGGCATTTTGTAAGTGCTTGTACTCGTATTCTTGGGCTTGAAGGCACACCAGAAGGAGTAGAAGATCAAGGGAAGCTGACCCGTGTAGCTGCGTTTCCTATTGGGATTGACTCTGAAAGATTCATTCAAGCCCTTGAACTCCCTGAAGTCCAGGCTCGCATGAAAGAACTGAAAGAAAGATTTGGAGGCCGAAAGGTAATGTTGGGTGTCGATCGTCTTGATATGATAAAAGGAATTCCCCAGAAAATCTTGGCATTTGAAAAGTTCCTTGAGGAGAATTCACACTGGCATGATAAAGTAGTCTTGCTGCAAATTGCTGTACCTACTAGGACAGATGTTCCTGAATATCAAAAGCTTACAAGCCAAGTGCATGAGATTGTAGGACGCATCAATGGAAGATTTGGAACACTTACAGCTGTTCCAATACACCATCTGGACCGGTCACTTGACTTTCATGCATTATGTGCACTCTACGCTGTAACTGGTACTCATTTTCTCCCATAA 1494 0.425 MVLLGCDTRMVHIMDNGLRLTSEIISRDLHSANHQAKRMPGNNYSCIPLTPRSRLERLLRERELRKSFKYTQTTEEAKDGNKEGEQFYGDSCISENENLGVHNEEEATETNADARFFTDERPSKQRLLVVANRLPVSAVREGVDSYHLEISVGGLVSALLGVKEFDTRWIGWAGVNVPDDVGKKALTTALAEMRCIPVFLDEEIVNQYYNGYCNNILWPLFHYLGLPQEDRLATTRTFQSQFDAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEYNDQMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSERFIQALELPEVQARMKELKERFGGRKVMLGVDRLDMIKGIPQKILAFEKFLEENSHWHDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTGTHFLP 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01962 497 Gene3D Glycogen Phosphorylase B; 117 372 - -
Cca09g01962 497 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 82 492 IPR001830 GO:0003824|GO:0005992
Cca09g01962 497 Pfam Glycosyltransferase family 20 126 491 IPR001830 GO:0003824|GO:0005992
Cca09g01962 497 Gene3D Glycogen Phosphorylase B; 373 495 - -
Cca09g01962 497 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 82 492 - -
Cca09g01962 497 CDD GT20_TPS 126 490 IPR001830 GO:0003824|GO:0005992
Cca09g01962 497 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 125 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01962 Cca-Chr9 44610033 44622355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01962 39 491 Trehalose Biosynthesis Gene Families AT1G78580 78.891 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01962 K16055 - gmx:100816642 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01962 09 44610033 44622355 Cca09g01962 09 44610033 44622355 ECH