LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g01959	ATGGCTTTTCCAAACCAATCCATGTCATCAGTTTCTCCCCAGAGAAAGatgggaagggggaagattgagatcaagaggattgagaacaccaccaatcgtcaagttaccttctgcaagcgcagaaatggcttgctcaagaaggcatatgagttatctgtgctttgtgatgcagaggttgctctaatagtcttttcaagccgtggcagactctatgaatATGCTAATAACAGCGTCAAAGGTTCAATTGAGAGGTACAAGAAAGCAAGTTCAGATTCATCTGGTGGTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCTGCCAAACTGCGTGTGCAAATCAGCAATCTGCAGAATCACAATAGGCAACATATTATTCCAATCTTTGCTAAAAATGTTTTGAATTGTAGGCAAATGATGGGTGAGGCTTTGAGCACTATGAATACTAAGGATCTCAAAAACCTTGAGACTAAATTAGAAAAAGGAATTAGCAGAATTCGTTCCAAGAAGAATGAGCTGCTATTTGCAGAAATTGAGTACATGCAGAAGAGGGAGATAGACTTGCACAATAACAACCAGCTTCTTAGAGCAAAGATAGCAGAAAGTGAGAGGAATGTGAACGTGTTGTCTGGAAGCACAAGCTACGAATCGATGCAATCTCAGTTTGACTCTCGTGGCTTCTTCCAAGTCACTGGATTACAGCCCAATAACAATCAGTATGCTGGCCAAGATCAGATGTCCCTTCAGTTTGTTTGA	765	0.319	MAFPNQSMSSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKGSIERYKKASSDSSGGGSASEANAQFYQQEAAKLRVQISNLQNHNRQHIIPIFAKNVLNCRQMMGEALSTMNTKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNVNVLSGSTSYESMQSQFDSRGFFQVTGLQPNNNQYAGQDQMSLQFV	254

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g01959	254	ProSiteProfiles	MADS-box domain profile.	17	77	IPR002100	GO:0003677\|GO:0046983
	Cca09g01959	254	ProSitePatterns	MADS-box domain signature.	19	73	IPR002100	GO:0003677\|GO:0046983
	Cca09g01959	254	MobiDBLite	consensus disorder prediction	1	20	-	-
	Cca09g01959	254	ProSiteProfiles	K-box domain profile.	103	208	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Cca09g01959	254	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	26	73	IPR002100	GO:0003677\|GO:0046983
	Cca09g01959	254	PRINTS	MADS domain signature	54	75	IPR002100	GO:0003677\|GO:0046983
	Cca09g01959	254	PRINTS	MADS domain signature	19	39	IPR002100	GO:0003677\|GO:0046983
	Cca09g01959	254	PRINTS	MADS domain signature	39	54	IPR002100	GO:0003677\|GO:0046983
	Cca09g01959	254	Coils	Coil	155	175	-	-
	Cca09g01959	254	CDD	MADS_MEF2_like	18	87	IPR033896	GO:0000977\|GO:0045944
	Cca09g01959	254	Coils	Coil	103	123	-	-
	Cca09g01959	254	PANTHER	AGAMOUSB	11	248	-	-
	Cca09g01959	254	Pfam	K-box region	139	202	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Cca09g01959	254	PANTHER	MADS BOX PROTEIN	11	248	-	-
	Cca09g01959	254	Gene3D	-	30	93	IPR036879	GO:0003677\|GO:0046983
	Cca09g01959	254	SMART	madsneu2	17	76	IPR002100	GO:0003677\|GO:0046983
	Cca09g01959	254	SUPERFAMILY	SRF-like	18	89	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g01959	Cca-Chr9	44574216	44581461	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g01959	15	254	MADS-box Gene Family	AT3G58780	62.948	2.07e-102	296

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Cca09g01959		K-box	4.5e-19	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g01959	K09264		-	gmx:100776263	394.43

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca09g01959	09	44574216	44581461	Cca09g01959	09	44574216	44581461	ECH
	Cca09g01959	09	44574216	44581461	Cca08g02303	08	56743444	56752248	PCT