Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01957 ATGTTTTCGTGCATTGCAAGTCTAGTTTCGTCGTGCCTGAACTCTGCTCCCGTTATCAGCGATGATGAATCTTCTTCTTCCACTTCTGCAGACCCTCTTCTGTGGTGTAGAGACCTTGAGAGGCATTCTTGTGGCGAAGTCTCCTTTGCTGTGGTTCAAGCCAATGATATAATTGAGGATCATAGCCAGGTTGAGATTGGCACTGGTGCCCTCTTTGTTGGGGTTTATGATGGCCATGGTGGTTCTGAAGCCTCCAGCTTCATCAAAGAACACCTCTTCCATCACCTAATGAGTGAGTCTTTTGAGTTTCTTTGGATGTTTCTGGTTTCTAAAACTGAGTGGAATTCAGTTTGCtttcttgatgcttttcttttggctttttcttccatctgctacttttcttttgaatctttgaattttttttttttttttttttttACTCTGCATATCGCGAATGTTGGTGACTCTCGTGCCGTAATTGCTTCCACAGGTAGATGTAACAAGATAAAAGCTGAGCAGTTGTCTATAGAGCACAATGCTAGTAGGCAAGATATTAGAGAAGAACTCAGGGCTTTGCATCCGCAAGATCCACACATTGTAGTTGTCAACCGTGGATCATGGCGCGTTAAAGGCATCATCCAGGTATCCAGATCCATAGGAGATGCATATTTGAAGAATCCGCAATCCTATATGGATTCATCATCCCCACCGTTCCCCTTGACTGAATCTCTTACCCAACCGGTGCTAACAGCAGAACCATCCCTATCTTCAAGAGTTTTGCAACCCCGTGACAAATTCCTTATATTTGCATCTGATGGACTTTGGGAACACCTGACAAATCAGCAAGCAGTCGAGATTGTTCATAGGAATCCACGAAATGGAATTGCAAGAAAACTTGTTAAGGCTGCTCTAAAGGTGGCAGCTCATAAAAGGAATGTGGAATATAAGGAGCTTCTGAAGATTGAGAAAGGGATCAGACGGCCTTATCATGATGATATCACTGTGATTGTTGTCTTCATAGATCATGATTTGCTTGAGCATATAGTTAATGAACCAGAGTTTCATTGGCTACACTGA 1077 0.4039 MFSCIASLVSSCLNSAPVISDDESSSSTSADPLLWCRDLERHSCGEVSFAVVQANDIIEDHSQVEIGTGALFVGVYDGHGGSEASSFIKEHLFHHLMSESFEFLWMFLVSKTEWNSVCFLDAFLLAFSSICYFSFESLNFFFFFFFTLHIANVGDSRAVIASTGRCNKIKAEQLSIEHNASRQDIREELRALHPQDPHIVVVNRGSWRVKGIIQVSRSIGDAYLKNPQSYMDSSSPPFPLTESLTQPVLTAEPSLSSRVLQPRDKFLIFASDGLWEHLTNQQAVEIVHRNPRNGIARKLVKAALKVAAHKRNVEYKELLKIEKGIRRPYHDDITVIVVFIDHDLLEHIVNEPEFHWLH 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01957 358 Pfam Protein phosphatase 2C 148 309 IPR001932 -
Cca09g01957 358 PANTHER ALPHABET, ISOFORM E-RELATED 147 345 - -
Cca09g01957 358 PANTHER ALPHABET, ISOFORM E-RELATED 10 99 - -
Cca09g01957 358 SMART PP2C_4 26 338 IPR001932 -
Cca09g01957 358 ProSiteProfiles PPM-type phosphatase domain profile. 46 340 IPR001932 -
Cca09g01957 358 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 147 345 - -
Cca09g01957 358 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 10 99 - -
Cca09g01957 358 SUPERFAMILY PP2C-like 53 341 IPR036457 -
Cca09g01957 358 ProSitePatterns PPM-type phosphatase domain signature. 72 80 IPR000222 GO:0043169
Cca09g01957 358 Gene3D - 146 351 IPR036457 -
Cca09g01957 358 Gene3D - 23 114 IPR036457 -
Cca09g01957 358 CDD PP2Cc 59 340 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01957 Cca-Chr9 44550220 44552322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01957 33 345 PP2C-type Phosphatase Gene Family AT5G06750 55.389 9.91e-122 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01957 K01102 - gmx:100806476 389.808