Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01951 ATGCTACTACCTAGGACCTTCTTTGCTTTCTTACTCTTTGCACTCTTTTGTTTCAGATGCCTAGAATATGCAGAATCCAAACTACCACAAGAGGAGGTTGATGCTCTTAAGGAAATCACTAGCACGATGGGTGCCACCTATTGGGAGTTTGATAGTGATTCTTGTCATATTAAAATGCTGGGATTAACACCAGAGCCACATAAAGGAAATCCAAGCAGCATTGATTGTGATTGCAATTTTGAAAATAACACCTGTCATGTAGTAAGGATTATCTTCAAGTGGTACAATCTTCCTGGCATGCTTCCACCTCAATTGGTTAAGCTTCCTTACCTCAGAGTGATTGATTTTGCTTCCAACTACCTAAGTGGTACGATCCCAAAGGAATGGGGTTCAATAAAATTAACTTTCATCTCTCTATTTGTTAATCGTTTATCAGGGGAAATTCCTATGGAGTTGTCAAATATTACCACTCTAACATATCTGAACCTTGAAGCCAACCGTTTTTCTGGTGTTGTTCCCCCTGAACTTGGAAGTCTATTTAATCTGCAGACTTTGATTTTATCATCCAATAAATTGTCTGGGAAGTTACCAGTGACATTTGCTAGGTTGCAGAATTTGACAGATTTGAGGATAAGTGATAACAGTTTCAACGGGAAAATACCTAGCTTCATACAGAATTGGAAATTGCTTCAAAGACTAGAAATGCATGCAAGTGGACTGGAGGGACCTATCCCATCAAGTATATCTCTTTTGAGAAATTTAAGTCGGTTGAGGATCAGTGATATCAATGGTCCAAGTCAGGATTTTCCTAATTTAAGCAACATGACAGGAATGACGATATTGGCTTTGAGAAATTGTCATATTACTGGAGAGCTTCCTGGCTACTTTTGGAATATGGAGAGTTTGAATATGTTGGACTTTAGTTTCAATAAGCTGGTTGGTAAAATACCAGACACTCCACATGCAGGGCATCTGAGATTTCTCTTCCTAACTGGCAACATGCTAAGTGGCAATATACCCGACTCAGTCTTGCTGGATGGAAGCAGTGTCGACCTTTCTTACAACAATTTTACATGGCAAGGACCAGATGAATCTGCTTGTAGAGATAACCTAAATTTAAACTTAAACTTGTTCCGGAGCTTCTTAGGGACCAAATTAGGGGGGATTCTTCCATGTTCAAATATCTCCAGTTGTCCTGCATATTCACATTGTCTTCATGTTAATTGTGGTGGAAAGGATTTAAAGGTGATGGAAAATGATGAAAATATTCATTATGTAGGAGATGGAAATGTGTTAGGCAGTGGTGCCGCTAAATATTTTATTGATTATGAAAATCACTGGGGATTTAGCAGCACTGGGGACTTCATGGATGATGGTGATTACCTAAATTCACGTTACATTAGGTCTTTGCCATCGTCAAATTTGCCTGAATTATATAAAACAGGCCGTGTTACTCCAATTTCGCTTACTTATTTTCACTATTGCTTGGAAAATGGGAAATATACTGTAAAACTCCACTTTGCAGAAATACAATTTACAAACGATAACACATATAGAAGCCTTGGGAAGCGCTTATTTGATATTTATGTTCAGGAAAGATTAGTTAGGAAGGATTTTAATATTGAAGGTGAAACACATGCTGCTCAAAAACCATATATATTGTCCATCTATAATGTCACTATAACAGACAATATTCTGGAGATTCGATTATACTGGGCTGGCAAAGGAACTACAAGGATTCCTGTTAGTGGAGTTTATGGTCCCCTCATATCAGCTTTCTCTATTGTTTCTGATTCTAAACCTTGTTCAGACAAAAACAATGTAAGGCGAAAGATAATCGTTGGAGTTGGATTTAGTGTTACAGCCTTATGCCTAGTCTCTATCATAGTTGGAATCTTTTGGTGGAAGGGATACTTCGAGGGAATGATTAGGAAAATAAAAGATACTGAAAGACAAGATTCTCAGAAGGGAACATTTACGTTAAAACAAATTAGAGATGCCACGGATGATTTCAATCCCGCTAACATGATTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCTGATGGTACATTGATAGCTGTCAAACAACTCTCATCAAGGTCCCAGCAGGGAAACCGAGAATTTTTGAATGAGATAGGCATGATATCTTGTATGCAACACCCTAATCTTGTGAAACTTCATGGATGTTGCATGGAAGGGGATCAATTGATATTGGTGTATGAGTACATGGAAAATAATAGTCTGGCTCGTGCTTTATTCAGCTCAAAAACTCAACTTAAACTTGATTGGGCCACAAGGCTTAGGATCTGTATTGGCATAGCAAAAGGTCTTGCATTTCTTCATGAAGAATCCAGACTCAAGATTGTTCATCGAGACATCAAAGCTACTAATGTCTTACTGGATGGGAATTTAAACCCTAAAATATCTGACTTTGGGTTGGCTAGGCTTGATGAAGAGGAGAAGACCCATGTCATCACCCGAGTAGCTGGGACAATAGGGTATATGGCCCCAGAATATGCATTATGGGGTTACCTGTCTCACAAGGCTGACGTTTATAGTTATGGAGTTGTGGTCTTGGAAGTTGTTAGTGGGAAGAACAACAACAATCAGATGCCAAATGATAACTATGTTTGCCTTTTAGACAAGGCATGTCATCTTCAGCGTACAGAAAACTTGATAGAGCTGGTTGATGAAAGGTTGAGATCAGAGGCAAACCCAAGTGAAGCAATAAATTTGATGAAAGTAGCTCTCTTGTGCACTGATGTATCGCCTTCAGTTAGGCCTACAATGTCTGAGGTTGTAAACATGCTTGTAGGAAGATTGAGCATTCCAGATGCTGTCCCACAACCCAGTGATTTTAGAGAAGATATAAGGTTTAAAGCCATGAGAGACATACATCAACAAAGGGAAAATCACAGTTTGAGTACAAGCCGAACAGACAATTCAAATGGAGTCATTACACTTGGCTCTCCCTAA 2988 0.3889 MLLPRTFFAFLLFALFCFRCLEYAESKLPQEEVDALKEITSTMGATYWEFDSDSCHIKMLGLTPEPHKGNPSSIDCDCNFENNTCHVVRIIFKWYNLPGMLPPQLVKLPYLRVIDFASNYLSGTIPKEWGSIKLTFISLFVNRLSGEIPMELSNITTLTYLNLEANRFSGVVPPELGSLFNLQTLILSSNKLSGKLPVTFARLQNLTDLRISDNSFNGKIPSFIQNWKLLQRLEMHASGLEGPIPSSISLLRNLSRLRISDINGPSQDFPNLSNMTGMTILALRNCHITGELPGYFWNMESLNMLDFSFNKLVGKIPDTPHAGHLRFLFLTGNMLSGNIPDSVLLDGSSVDLSYNNFTWQGPDESACRDNLNLNLNLFRSFLGTKLGGILPCSNISSCPAYSHCLHVNCGGKDLKVMENDENIHYVGDGNVLGSGAAKYFIDYENHWGFSSTGDFMDDGDYLNSRYIRSLPSSNLPELYKTGRVTPISLTYFHYCLENGKYTVKLHFAEIQFTNDNTYRSLGKRLFDIYVQERLVRKDFNIEGETHAAQKPYILSIYNVTITDNILEIRLYWAGKGTTRIPVSGVYGPLISAFSIVSDSKPCSDKNNVRRKIIVGVGFSVTALCLVSIIVGIFWWKGYFEGMIRKIKDTERQDSQKGTFTLKQIRDATDDFNPANMIGEGGFGPVYKGQLSDGTLIAVKQLSSRSQQGNREFLNEIGMISCMQHPNLVKLHGCCMEGDQLILVYEYMENNSLARALFSSKTQLKLDWATRLRICIGIAKGLAFLHEESRLKIVHRDIKATNVLLDGNLNPKISDFGLARLDEEEKTHVITRVAGTIGYMAPEYALWGYLSHKADVYSYGVVVLEVVSGKNNNNQMPNDNYVCLLDKACHLQRTENLIELVDERLRSEANPSEAINLMKVALLCTDVSPSVRPTMSEVVNMLVGRLSIPDAVPQPSDFREDIRFKAMRDIHQQRENHSLSTSRTDNSNGVITLGSP 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01951 995 Gene3D Phosphorylase Kinase; domain 1 640 746 - -
Cca09g01951 995 SMART serkin_6 671 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01951 995 Gene3D Ribonuclease Inhibitor 45 195 IPR032675 -
Cca09g01951 995 Pfam Leucine rich repeat 157 215 IPR001611 GO:0005515
Cca09g01951 995 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 66 983 - -
Cca09g01951 995 SUPERFAMILY Protein kinase-like (PK-like) 655 941 IPR011009 -
Cca09g01951 995 PANTHER RECEPTOR-LIKE KINASE IN FLOWERS 1-RELATED 66 983 - -
Cca09g01951 995 Gene3D Transferase(Phosphotransferase) domain 1 747 947 - -
Cca09g01951 995 CDD STKc_IRAK 677 941 - -
Cca09g01951 995 Gene3D - 402 600 - -
Cca09g01951 995 MobiDBLite consensus disorder prediction 978 995 - -
Cca09g01951 995 SUPERFAMILY L domain-like 76 341 - -
Cca09g01951 995 Pfam Malectin domain 404 593 IPR021720 -
Cca09g01951 995 MobiDBLite consensus disorder prediction 970 995 - -
Cca09g01951 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Cca09g01951 995 Gene3D Ribonuclease Inhibitor 266 373 IPR032675 -
Cca09g01951 995 Gene3D Ribonuclease Inhibitor 196 265 IPR032675 -
Cca09g01951 995 Pfam Protein tyrosine and serine/threonine kinase 675 941 IPR001245 GO:0004672|GO:0006468
Cca09g01951 995 ProSiteProfiles Protein kinase domain profile. 671 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01951 Cca-Chr9 44474637 44492983 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01951 8 836 Receptor kinase-like Gene Family AT1G29750 59.976 0.0 1009
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca09g01951 PK_Tyr_Ser-Thr 2.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01951 - - vra:106779815 1540.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01951 09 44474637 44492983 Cca09g01951 09 44474637 44492983 ECH
Cca09g01951 09 44474637 44492983 Cca08g02316 08 56895370 56905824 PCT