Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01946 ATGGAGGATACTTCAGCAACACATGGTAACCATGACGTGGTTTTAGATGTAAACAAGGATGTCTCTAGAACAACTCAAGACTCGCGCTCTTGTGTTAATGTTTCTTTCCTGCAGAAGTTGGTGGCGGAGACAGTGGGCACATATTTCTTGATATTTGCGGGGTGTGGTTCAGTGGTGGTGAACAAGAACAACGACAACATCGTAACTCTTCCTGGGATAGCAATTACGTGGGGACTGGTTGTCATGGTGCTCGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCTGTCACCATTGCTTTTACCTCCATCGGAAGGTTTCCATTGAAGCAGGTGCCAGTTTATGTAATAGCTCAGGTTGCTGGATCCACACTTGCAAGCGGGAGTCTGAGACTAATATTCAATGGCAAGCATGACCATTTTTCAGGAACACTCCCAACAGGGTCTCACCTCCAATCTTTTGTCATTGAATTCATAATCACTTTTTTCCTTATGTTTGTCGTATCCGGAGTTGCCACCGATAACAGAGCGATCGGTGAGTTGGCCGGGATTGCTGTTGGATCCACTGTGCTGTTGAATGTGATGTTTGCAGGGCCAGTGTCAGGAGCATCAATGAACCCAGCAAGAAGCATAGGGCCTGCGTTTGTACACAATGAATACCATGCAATATGGATATACTTAGTGGCTCCAACTTTGGGGGCTGTGGCTGGTGCATGGGTCTACAACACAATTAGATACACAGACAAGTCACTGCGTGAGATCACCAAGAGTGCCTCTTTCCTTAAAAGCAGAGAGTAG 807 0.4634 MEDTSATHGNHDVVLDVNKDVSRTTQDSRSCVNVSFLQKLVAETVGTYFLIFAGCGSVVVNKNNDNIVTLPGIAITWGLVVMVLVYSVGHISGAHFNPAVTIAFTSIGRFPLKQVPVYVIAQVAGSTLASGSLRLIFNGKHDHFSGTLPTGSHLQSFVIEFIITFFLMFVVSGVATDNRAIGELAGIAVGSTVLLNVMFAGPVSGASMNPARSIGPAFVHNEYHAIWIYLVAPTLGAVAGAWVYNTIRYTDKSLREITKSASFLKSRE 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01946 268 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca09g01946 268 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Cca09g01946 268 PANTHER AQUAPORIN NIP2-1 1 266 IPR034294 -
Cca09g01946 268 TIGRFAM MIP: MIP family channel proteins 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca09g01946 268 Gene3D Glycerol uptake facilitator protein. 2 260 IPR023271 -
Cca09g01946 268 Pfam Major intrinsic protein 33 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca09g01946 268 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 266 - -
Cca09g01946 268 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca09g01946 268 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca09g01946 268 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca09g01946 268 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca09g01946 268 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca09g01946 268 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca09g01946 268 SUPERFAMILY Aquaporin-like 31 257 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01946 Cca-Chr9 44432299 44433991 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01946 34 266 Major Intrinsic Protein MIP AT5G37810 61.373 3.04e-103 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01946 K09874 - gmx:100798526 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01946 09 44432299 44433991 Cca09g01946 09 44432299 44433991 ECH
Cca09g01946 09 44432299 44433991 Cca08g02321 08 56964737 56967190 PCT