Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01945 ATGGCTGATTATTCAACAGGAACTGAATCCCACGAGGTGGTTGTAAATGTAACCAAGGACCCCTCCAAAATATGTGAACGTTCAGATTCCTTTGTCTCTGTCCATTGCTTGCAAAAGTTGGTGGCGGAGACAGTGGGCACATATTTCTTGATATTTGCGGGGTGTGGTTCAGTGGTGGTGAACAAGAACAACGACAACATCGTAACTCTTCCTGGGATAGCAATTACGTGGGGACTGGTTGTCATGGTGCTCGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCTGTCACCATTGCTTTTACCTCCATCGGAAGGTTTCCATTGAAGCAGGTACCAGCTTATGTAGCAGCTCAACTCCTAGGAAGCACACTTGCGAGTGGAACTCTGAGACTAATATTTATGGGGAAGCATGACCAGTTTTCAGGAACACTCCCAACAGGGTCTTACCTCCAAGCTTTTGTGTTTGAATTCATAATCACATTTCTCCTTATGTTTGTCATATGCGGGGTCGCCACCGATAACAGAGCGATTGGTGAGTTGGCTGGGATTGCAATCGGGTCTACGATACTGCTGAATGTGATGATTGGAGGGCCAATCACAGGAGCATCAATGAACCCAGTTAGAAGCCTAGGACCAGCTTTTGTGCACACGCAATACAGAGGAATATGGATATACTTGTTGGCACCGATTGTGGGGGCTGTGGCCGGAGCATGGGTCTACAACGTCATTAGGTACACAGAAAAGCCACTGCGTGAGATCACAAAGACCGGCTCTTTCCTCAAAGGACGTGCTGACATCAAATAG 816 0.4718 MADYSTGTESHEVVVNVTKDPSKICERSDSFVSVHCLQKLVAETVGTYFLIFAGCGSVVVNKNNDNIVTLPGIAITWGLVVMVLVYSVGHISGAHFNPAVTIAFTSIGRFPLKQVPAYVAAQLLGSTLASGTLRLIFMGKHDQFSGTLPTGSYLQAFVFEFIITFLLMFVICGVATDNRAIGELAGIAIGSTILLNVMIGGPITGASMNPVRSLGPAFVHTQYRGIWIYLLAPIVGAVAGAWVYNVIRYTEKPLREITKTGSFLKGRADIK 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01945 271 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca09g01945 271 TIGRFAM MIP: MIP family channel proteins 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca09g01945 271 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Cca09g01945 271 Gene3D Glycerol uptake facilitator protein. 3 258 IPR023271 -
Cca09g01945 271 PANTHER NODULIN-26 1 269 - -
Cca09g01945 271 PANTHER AQUAPORIN NIP2-1 1 269 IPR034294 -
Cca09g01945 271 SUPERFAMILY Aquaporin-like 32 257 IPR023271 -
Cca09g01945 271 Pfam Major intrinsic protein 32 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca09g01945 271 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca09g01945 271 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca09g01945 271 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca09g01945 271 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca09g01945 271 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca09g01945 271 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01945 Cca-Chr9 44416756 44420431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01945 1 265 Major Intrinsic Protein MIP AT5G37810 55.351 1.40e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01945 K09874 - gmx:100813448 450.284