Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01943 ATGGATGAAGCACAGGGTAGTTCAAGTTCCctgcctcctttcctagcaaagacttatgagatggttgatgattcttcctcggattcgattgtttcgtggagtgtaactagcaagagtttcattgtgtggaatcccccagaatttgcaagggatttgctgcctagattctttaagcacaacaacttctcaagtttcatcaggcagctgaacacatatGGATTTAGGAAAATAGACCCAGAACAATGGGAATTTGCTAATGATGATTTTGTAAGAGGGCAACCTCATCTTATGAAGAATATCCATAGACGGAAGCCAGTTCATAGCCATTCTTTGCAGAATCTCCAAGCACAGGGCCCACTAGGGGAGTCAGAAAGGCAGAGTTTTACTGATGAAATAGAGAAGCTTAAACACGATAAAGAACGACTTCTTGTGGAATTACAGAGATATCAACATGAGTGGCAAACATATGAGATACAAGTACATTGCTCGAAAGATCGATTGGAAAAATTGGAACAAAAGCAAAGAAAGATGGTTTCTTCTGTTTCTCATGTATTGCAGAAACCTGTGATTGCTGTAAATATCTTGCCTCTGACAGAAACCATGGAAAGGAAACGAAGGTTGCCGAAAAGCAGCTACTTTAATGATGAAGCTAGTATTGAAGATGCTGTTGAAACTTCCCAAATGTTACCAAGAGAAAATGCAGAGAATACCTCTGTCTTGACATTAAACATGGAGCGATTGGATCAGCTTGAAACATCTATGGCGTTTTGGGAGGCTATTGCACATGATTATTGTGACACCCACGTTCCAGTTCAGTCAAACCTGGATCTTGATGAATCTACAAGTTGTGCTGATAGTCCATCTATATCTTGTGAGCAATTAGATATTGAGAATCGGCCTAAGTCATCTGGAATTGACATGAATTCTGAGCCAACTGCAGCTGCTGTTCCTGAGCCTGTTGCATCCAAAGAACAACCTGCGGGAACCACTGTTGCAGCAACTGGTGTTAATGATGTATTCTGGGAACAGTTCTTGACAGAGGATCCTGGTGCATCAGAAACACAGGAAGTGCAGTCAGAAAGAAAGGATTATGATGGCAGAAAGAATGAAGGAAAACCCAGTGACCTTAACAAATTTTGGTGGAACATACGGACTGCAAATAATCTTCCAGAACAGATGGGGCATGTTGGTCAAGCAGAGAAAACTTAG 1209 0.349 MDEAQGSSSSLPPFLAKTYEMVDDSSSDSIVSWSVTSKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQGPLGESERQSFTDEIEKLKHDKERLLVELQRYQHEWQTYEIQVHCSKDRLEKLEQKQRKMVSSVSHVLQKPVIAVNILPLTETMERKRRLPKSSYFNDEASIEDAVETSQMLPRENAENTSVLTLNMERLDQLETSMAFWEAIAHDYCDTHVPVQSNLDLDESTSCADSPSISCEQLDIENRPKSSGIDMNSEPTAAAVPEPVASKEQPAGTTVAATGVNDVFWEQFLTEDPGASETQEVQSERKDYDGRKNEGKPSDLNKFWWNIRTANNLPEQMGHVGQAEKT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01943 402 MobiDBLite consensus disorder prediction 354 374 - -
Cca09g01943 402 Coils Coil 125 152 - -
Cca09g01943 402 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 383 IPR027725 -
Cca09g01943 402 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca09g01943 402 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca09g01943 402 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca09g01943 402 MobiDBLite consensus disorder prediction 299 325 - -
Cca09g01943 402 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca09g01943 402 MobiDBLite consensus disorder prediction 346 375 - -
Cca09g01943 402 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 383 - -
Cca09g01943 402 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Cca09g01943 402 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca09g01943 402 Gene3D - 6 104 IPR036388 -
Cca09g01943 402 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01943 Cca-Chr9 44386371 44388947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01943 7 402 HSF AT4G18880 53.563 1.75e-127 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca09g01943 HSF_DNA-bind 9.9e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01943 K09419 - gmx:100798004 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01943 09 44386371 44388947 Cca09g01943 09 44386371 44388947 ECH
Cca08g02330 08 57088402 57091896 Cca09g01943 09 44386371 44388947 ECH
Cca09g01943 09 44386371 44388947 Cca08g02330 08 57088402 57091896 PCT