Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01942 ATGAAGTGGGGTGGAAGAAAGCcttcttcttcttcttcttcttctAGGCCTTCTTTCATATCTCATGTCTCTCCTTTTTCATGGCTGTCTAAGTTCAAGCAAATGAGGATCAACTCAGAGGCAAAACCAGGAACACTGAAGCAAAATTCAACTCCGTCTGATAGTTCGTCCCATTATGCTTATGGGAACAATAAAGGCAGGTTTTACGGAAGGGATGATGAGGCTTTCTGGAGACTCTCATTTGGTGAAGAGGGTAACGAGCATAATAAGAAAAGTGAACATGTTTTGAAACATGTGAAGTACAATTTGGATGCTGAACATGGCACTCCATCCTCAAGTTTTGGTGGAGTGAATGCTAGAAGACAAGGTGGAAAAGAAAGCACTCAGAAGTTGAAGCAGAAAGAAACTGGACTGAGAGAAGAAAGAAAGTTGCTGGATGAAGCAGCAAAGAGTGTTAAGGAGCTTGAGTCCTTAAGGAGGAGATATGAGAGAAAAGCACAAAGAGTTTTGCAGGAGCAGCTCTTGAAATTGGAAAGAGCAGAAGAGGAAGCTGAGTTTGCATCAAGTCCATTAGAAAATGATGTGATGCAATTTGAGTCACCAAGAACAATTTGCACACCAAGAAAGCATTTGTTTTCCTCTTCTGTGGATTCAAAGAGTTATGGCCTTGGAGGTCTCAGAGAAGCTCGTGTGTGTAGTCCCTTGTTGGGTTCTGAGTGGCATAATTTGAAGCAAACCGAGGAGTTGAAACTGAAAGCAAAGAGTAACAAACAAAGGCAATCACTTCATGTGAGCAGAGAAAACCAGAGGAGGAAACCAAAGCAGAACTCCAAGAGAGATTTCAGAGATTCAATGATTGAGATGATCACAGAGAAACAGATCAGCCAGCCAGATGAAATGGAAGATCTGTTAGCATGTTATCTGACTTTGAATTCTAGTGAGTACCATGATCTCATCATCCAAGTGTTCAAGCAGGTTTCACCCATTATAAGCCCCACATAA 1002 0.4082 MKWGGRKPSSSSSSSRPSFISHVSPFSWLSKFKQMRINSEAKPGTLKQNSTPSDSSSHYAYGNNKGRFYGRDDEAFWRLSFGEEGNEHNKKSEHVLKHVKYNLDAEHGTPSSSFGGVNARRQGGKESTQKLKQKETGLREERKLLDEAAKSVKELESLRRRYERKAQRVLQEQLLKLERAEEEAEFASSPLENDVMQFESPRTICTPRKHLFSSSVDSKSYGLGGLREARVCSPLLGSEWHNLKQTEELKLKAKSNKQRQSLHVSRENQRRKPKQNSKRDFRDSMIEMITEKQISQPDEMEDLLACYLTLNSSEYHDLIIQVFKQVSPIISPT 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01942 333 Coils Coil 138 183 - -
Cca09g01942 333 MobiDBLite consensus disorder prediction 125 139 - -
Cca09g01942 333 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 276 326 IPR006458 -
Cca09g01942 333 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 278 326 IPR038933 GO:0045892
Cca09g01942 333 MobiDBLite consensus disorder prediction 39 64 - -
Cca09g01942 333 PANTHER TRANSCRIPTION REPRESSOR OFP4 278 326 - -
Cca09g01942 333 PANTHER TRANSCRIPTION REPRESSOR OFP4 9 279 - -
Cca09g01942 333 MobiDBLite consensus disorder prediction 106 124 - -
Cca09g01942 333 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 9 279 IPR038933 GO:0045892
Cca09g01942 333 MobiDBLite consensus disorder prediction 106 139 - -
Cca09g01942 333 ProSiteProfiles OVATE domain profile. 270 329 IPR006458 -
Cca09g01942 333 MobiDBLite consensus disorder prediction 1 21 - -
Cca09g01942 333 MobiDBLite consensus disorder prediction 41 62 - -
Cca09g01942 333 MobiDBLite consensus disorder prediction 252 283 - -
Cca09g01942 333 Pfam Transcriptional repressor, ovate 278 326 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01942 Cca-Chr9 44377913 44380014 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Cca09g01942 Ovate 1.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01942 - - var:108325898 478.018