Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01941 ATGGCTTCTGGGGCAATTTTCTCGTCGCTCCGGCGGCGTCGCTCGCCGTCTCTGGAGGCGTTTCTGGCGCCGGTTGACCTCTCCGGCGTGATGCTGGTGGAGACGCTCATCTCCGTCGCCGGCGAAGTCGCGTCCTGCTTCTCCGGCCACCGGTTCCCCTTCCAGCGCCGGAACTCGCGTTCCCTCATCGGAAAAGTCGAGATTTTTCGGTCAATGTTAGAGTGTTTGAGAGACTCCGGCGGCGGCGCTCTTCCCCCCACGGTGGTGCTCTGCTTGAAGGAGCTTTATCTGTTGCTGTATCGCTCCAAGATTCTTCTTGATTACTGTGCCCAATCGAGCAAGTTGTGGCTGTTGCTTCAGAACCATTGTGTTTCTGGTCACTTCCATGATTTGAGCCAAGAATTCTCGACCCTTTTGGATGTTTTCCCCGTTGGGGAGGTTGGCCTCAGTGATGATATTAGGGAACAGATTGAGTTGTTGCAGAGACAATCCAAAAAGGCCAAATTGTTCATAGACAAGAAAGATGATGCACTTAGGATAAGGTTCTATTGGTTTCTTGATGAGTTTGAGAATGGAAGGGTTCCTGATTCTAAGGACTTGAAGTGTTTCTTTGTGGATAAGTTGCAGATTGTTGATGCTAATAGTTGCAGGGTGGAGGTTGAAGCCTTGGAGGAGCAGATTGTGAATCATGAGGGCGATGTTGAGCCAACAGTTCCTGTGCTTAATGGCATGGTGGCTATCACAAGGTATTGCAGGTTTTTATTGTTTGGATTTGAGGAAGAATTGGAAATTGAGATTCAGAAGAAGGGGAGGAAGAGGTTGATTACTCAGGAAATTGCTGAAACGTTTTTGACTGTTCCCAAGGACTTTTGCTGTCCTATTTCATTGGATTTGATGAGTGATCCTGTGATAATTTCCACCGGTCAAACTTATGATAGGAGGTGTATATGGAGGTGGATGGAGGAGGGACATTGTACTTGTCCCAAAACGGGGCAATTGCTTAGTCATAATAGGCTTGTCCCTAATCGTGCTCTTAGGAATTTGATTATGCAGTGGTGCACTGCACATGGGGTACCCTATGACCCCCCTGAGGTGGCTGATGCATCTGTTGAGATGTTTGCATCAGCTTGTCCCTCCAAAGCTGCCCTTGCAGCTAACAGAGGGACCGCCACGCTTCTCATTCAACAACTCGCTGATGGGTCGCAGGCTGCAAAGACTCTTGCTGCTAGGGAGATAAGATTGCTGGCGAAAACTGGAAAGGAAAATCGCGCCTTCATCGCGCAAGCTGGGGCCATTCCTCATCTTAGGAACTTGCTTTCCTCTCCTAATGCTGTCGCACAGGAGAATTCTGTGACTGCATTGCTCAACTTGTCTATTTATGAAAGGAATAAAAGTATGATCATGGAGGAGGAAGGGTGTCTGGGATCAATAGTTGAGGTGCTGCAATTCGGGCTCACAACTGAGGCAAGGGAGAATGCTGCTGCAACATTGTTCAGCCTCTCTGCTGTCCATGAGTATAAGAAGCGAATCGCTGATAATGTGGGAGCTGTTGAAGCACTGGCATGGTTGTTGCAAGAGGGGACTCAAAGAGGGAAGAAGGATGCTGTTACAGCATTGTTTAATCTCTCCACTCACACTGAGAATTGTTTGAGAATGATAGAGGCAGGGGCAGTCAAGGCTATGGTTGTGGCTTTGGGGAATGAAGGAGTTGCTGAGGAAGCAGCTGGTGCCTTGGCCTTGATTGTTCGGCAGCCGGTTGGTGCCGTAGCTGTGGTAAAGGAGGAAGCAGCGGTTGCTGGATTGATTGGAATGATGCGTTGTGGAACGCCGAGAGGTAAAGAGAATGCAGTTGCAGCATTGTTGGAGCTGTGCAGGAGTGGCGGCAAAGCTGCAACCGAGAGGGTGGTTAAGGCACCAGCTTTGGCCGGATTGCTTCAAACTTTGCTTTTCACAGGGACAAAGAGGGCAAGAAGAAAGGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTCTGCATTATGGTGGATTAGGTGTGGGTTATGCATTTGCTAGTGACTCAGCTTCAACTAGGAATACTACAAGCTTTGTGAGTGATGTTTCACTTCCGATGTCTATTTCTGTTCCTGTGTTATAA 2145 0.4858 MASGAIFSSLRRRRSPSLEAFLAPVDLSGVMLVETLISVAGEVASCFSGHRFPFQRRNSRSLIGKVEIFRSMLECLRDSGGGALPPTVVLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHCVSGHFHDLSQEFSTLLDVFPVGEVGLSDDIREQIELLQRQSKKAKLFIDKKDDALRIRFYWFLDEFENGRVPDSKDLKCFFVDKLQIVDANSCRVEVEALEEQIVNHEGDVEPTVPVLNGMVAITRYCRFLLFGFEEELEIEIQKKGRKRLITQEIAETFLTVPKDFCCPISLDLMSDPVIISTGQTYDRRCIWRWMEEGHCTCPKTGQLLSHNRLVPNRALRNLIMQWCTAHGVPYDPPEVADASVEMFASACPSKAALAANRGTATLLIQQLADGSQAAKTLAAREIRLLAKTGKENRAFIAQAGAIPHLRNLLSSPNAVAQENSVTALLNLSIYERNKSMIMEEEGCLGSIVEVLQFGLTTEARENAAATLFSLSAVHEYKKRIADNVGAVEALAWLLQEGTQRGKKDAVTALFNLSTHTENCLRMIEAGAVKAMVVALGNEGVAEEAAGALALIVRQPVGAVAVVKEEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGKAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASDSASTRNTTSFVSDVSLPMSISVPVL 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01941 714 PANTHER U BOX DOMAIN-CONTAINING 11 691 - -
Cca09g01941 714 CDD RING-Ubox_PUB 290 332 IPR045210 -
Cca09g01941 714 SUPERFAMILY ARM repeat 385 667 IPR016024 -
Cca09g01941 714 ProSiteProfiles U-box domain profile. 285 359 IPR003613 GO:0004842|GO:0016567
Cca09g01941 714 SUPERFAMILY RING/U-box 275 360 - -
Cca09g01941 714 Pfam U-box domain 286 356 IPR003613 GO:0004842|GO:0016567
Cca09g01941 714 Pfam Armadillo/beta-catenin-like repeat 420 458 IPR000225 GO:0005515
Cca09g01941 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 515 557 IPR000225 GO:0005515
Cca09g01941 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 430 472 IPR000225 GO:0005515
Cca09g01941 714 SMART Ubox_2 289 352 IPR003613 GO:0004842|GO:0016567
Cca09g01941 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 360 IPR013083 -
Cca09g01941 714 SMART arm_5 461 502 IPR000225 GO:0005515
Cca09g01941 714 SMART arm_5 419 459 IPR000225 GO:0005515
Cca09g01941 714 SMART arm_5 545 583 IPR000225 GO:0005515
Cca09g01941 714 SMART arm_5 504 544 IPR000225 GO:0005515
Cca09g01941 714 Coils Coil 213 233 - -
Cca09g01941 714 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 691 - -
Cca09g01941 714 Gene3D - 362 681 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01941 Cca-Chr9 44365892 44368601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01941 1 714 U-box Gene Family AT1G29340 69.796 0.0 934
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01941 - - gmx:100797462 1234.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01941 09 44365892 44368601 Cca09g01941 09 44365892 44368601 ECH
Cca09g01941 09 44365892 44368601 Cca08g02331 08 57107913 57110919 PCT