Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01915 ATGGATCAGGCAAAAAGCAAAGGCAGTGGTGAGATATTGGATCATGTTGATGAAAGGGTGGATGAGAATTTGAACCAAATGGTTGAAGGAAATGCAATCGATGCAGGAGATGGACATAGCTTGGGTGACAGAGTGAGTGTAATCGGGGAAGATGTCACTTCAGAAGAGATGTGCAATGATCTTGGATTGAATAGGGAGCTAAAGAAGGGTCCTCAAGAAGTTGATGATCAGGACATGGGTGACCCACAAGAAATTGATACAATGCATGGGGTTGATCAAGGAACTAGTTATAGTTCAAGAAATTTGGTTAATGGCGAAGTACTTGAAACTTGTGTTTTAATAGATCCTTTTGCTCAGATTGAGTGTGTCAATGGAGATAATAGGAAATTGGAAGCAAATCACAATGAATCAGGGTTGAGCAAGGTGTCCATAAAAGCACCCAAAGGGGTGTCTGAGACAGATAAAAATTCATGTGTGATTGATATAAACCGTGACAGCTGCGATGGTTTTAGTGAGAATTTGGAAGGTGAAATGGTTTGTAGGATTTGCCATCTGGCCTCTGGGCAACCATTAGAAGCAGTAGCTGTTGGCACTGCAGATGGTGCTACTACCAATACAGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAGCTAGGCATTGCGCACAGTCATTGTGCTGAGGCATGGTTCAAGCTTAAAGGAAACAGGTTGTGTGAAATATGTGGTGAGACTGCAAAAAATGTTTCAGATGTCACGGATAATGGATTTGTTGAAGAGTGGAATGAAACAAGATTCATGGAAACTGAGAATACCTCATCCAGCAGGTTTGGTGGATGCTGGCGCGGACAACCATTTTGTAACTTCTTAATGGCATGCCTGGTAATAGCTTTTGTCCTGCCGTGGTTCTTTCGTGTAAATATGTTCTAG 930 0.4194 MDQAKSKGSGEILDHVDERVDENLNQMVEGNAIDAGDGHSLGDRVSVIGEDVTSEEMCNDLGLNRELKKGPQEVDDQDMGDPQEIDTMHGVDQGTSYSSRNLVNGEVLETCVLIDPFAQIECVNGDNRKLEANHNESGLSKVSIKAPKGVSETDKNSCVIDINRDSCDGFSENLEGEMVCRICHLASGQPLEAVAVGTADGATTNTDLIQLGCACKDELGIAHSHCAEAWFKLKGNRLCEICGETAKNVSDVTDNGFVEEWNETRFMETENTSSSRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01915 309 PANTHER ZINC FINGER, RING-CH-TYPE 1 309 - -
Cca09g01915 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 254 IPR013083 -
Cca09g01915 309 SUPERFAMILY RING/U-box 177 245 - -
Cca09g01915 309 SMART ringv_2 179 243 IPR011016 GO:0008270
Cca09g01915 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 309 - -
Cca09g01915 309 ProSiteProfiles Zinc finger RING-CH-type profile. 172 249 IPR011016 GO:0008270
Cca09g01915 309 Pfam RING-variant domain 200 242 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01915 Cca-Chr9 44070271 44074353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01915 152 308 C3H Transcription Factor Family AT5G05830 37.725 9.90e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01915 - - gmx:100791129 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01915 09 44070271 44074353 Cca09g01915 09 44070271 44074353 ECH