Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01914 ATGTCTACCTCTGTTGAGAATGGAAATGATTCTCTGAATGGTCACATCATATCCACTACAGTTGGAGGTAAAAATGGGAAGCCCAAACAGACAATAAGGTACATTGCGGAACGCATCGTGGGAGCTGGGTCATTTGGAATTGTCTTCTTGGCTAAATGCTTGGAAACGGGGGAGCCTGTGGCCATTAAGAAAGTATTACAGGACAGAAGATATAAGAATCATGAGCTACAGTTAATGCGCAAGATGGACCATCCAAATGTAATCTCTTTGAAGCATCGTTTCTTTTCCACTACAAGTGCAGATGAACTTTTCCTTAATTTGGTGATGGAATATATTCCAGAGTCTATGTATCGAGTCTCAAAGTTCTATAGTAATACTAATCAAAGAATGCCACTTATCTATGTAAAACTTTACATGCATCAGATTTTCCGGGGGCTGGCTTATATCCACACTGTCCCTGGGGTTTGCCACAGAGATTTGACGCCTCAAAATATACTGGTTGACCCACTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGTTGGTCAAAGGTGAAGCTAATATATCACATATATGTTCACTTTTCTATCGGGCTCCGGAACTTATGTTTGGTGCCACTGAGTATACTACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTGCTTTTGGGCAAGCCATTATTTCCTGGCGAAAATGCAGTGGATCAGCTTGTAGAGATTATCAAGGTTCTTGGCACACCCACTCAGGAGGAAGTTCCTTGTATGAATCCAAACAAAAAAAACTTCAAGTTTCCGCAGATATTCCATGAAAAAATGCCTCCAGAAGCAATTGATCTTGCTTCCCGGCTTCTGCAGTATTCCCCAAGTCTTCGATGTACTGCGCTAGAAGCATGTGCACACCCATTCTTTGATGAACTCCGTGAACCCAATGCTCAGTTGCCGGATGGTAGTCCATTTCCCCCTTTATTCAACTTTAAACAAGAGTTATCTGGAGCATCTCCAGAGCTTATTGATAAATTGATACCTGACCACGTGAAGCGGTAG 1065 0.4197 MSTSVENGNDSLNGHIISTTVGGKNGKPKQTIRYIAERIVGAGSFGIVFLAKCLETGEPVAIKKVLQDRRYKNHELQLMRKMDHPNVISLKHRFFSTTSADELFLNLVMEYIPESMYRVSKFYSNTNQRMPLIYVKLYMHQIFRGLAYIHTVPGVCHRDLTPQNILVDPLTHQVKICDFGSAKVLVKGEANISHICSLFYRAPELMFGATEYTTSIDIWSAGCVLAELLLGKPLFPGENAVDQLVEIIKVLGTPTQEEVPCMNPNKKNFKFPQIFHEKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNAQLPDGSPFPPLFNFKQELSGASPELIDKLIPDHVKR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01914 354 ProSitePatterns Tyrosine protein kinases specific active-site signature. 155 167 IPR008266 GO:0004672|GO:0006468
Cca09g01914 354 Gene3D Transferase(Phosphotransferase) domain 1 114 353 - -
Cca09g01914 354 ProSiteProfiles Protein kinase domain profile. 34 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01914 354 Pfam Protein kinase domain 36 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01914 354 SUPERFAMILY Protein kinase-like (PK-like) 33 334 IPR011009 -
Cca09g01914 354 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 354 - -
Cca09g01914 354 CDD STKc_GSK3 29 313 IPR039192 -
Cca09g01914 354 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
Cca09g01914 354 Gene3D Phosphorylase Kinase; domain 1 19 113 - -
Cca09g01914 354 PANTHER SHAGGY-RELATED PROTEIN KINASE ETA 1 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01914 Cca-Chr9 44053387 44061324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01914 38 348 MAP Kinase Gene Family AT3G59790 34.535 4.89e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Cca09g01914 Pkinase 7.3e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01914 K14502 - gmx:100812801 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01914 09 44053387 44061324 Cca09g01914 09 44053387 44061324 ECH
Cca08g02817 08 62518753 62526037 Cca09g01914 09 44053387 44061324 PCT