Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01912 ATGAAGCCCTTTTGCAGATTCTTGATTCTTGTATCGCTGTTTTCTCTTGCGGAATCTTCATGCAACAACAGTGAAGAGCATGAGTTGGTGTCAAAGGCTTTCAAATCAGTCTCTGGCTTCAACGCTTCCTCCCGGTTCCAAACCAACTGCTCACAAACTCACATCACCCGAATAGTACTTCCATCCCAAAACCTCAGCGGCACCATTTCATGGAACTATCTGAGGAACATGTCGCGTTTGCAGGTTCTCGATCTGTCCCAGAATTCCCTGGAGGGCCACGTGCCTAGCTGGTTTTGGTCAAGCTCGAACTTGTCGGAAATAAACCTCTCCAGAAACAGGTTCGGAGGCAGCATCGATATCAACACCTCGTTTTCATCCATTGAAACGCTGAACCTCTCCCACAACAGGTTCACCAATTCAATCCAACTTTCTGGCCTCCGAAACCTTAAAATCCTCGACTTATCAAACAACACCTTCACCGGTAACTTCCCTTCCGATTTCCCTCCACTCAACACTCTCGAATACCTCAACATCTCATTCAACAACTTCACCGCCTCCACTAGCCTAAACGAGTTGGATAGATTCAAGTTCAACGAGTCATCTTTCATCCACGCTGGCAACAACTTCACCTTCGACAACAGCACAAATCCAATTCACAAGAAACAAGAGAGGCCAAAATCCAAAACGGTGATTGTTGCAGCGTCGTCGCCGTGTGCATCGGCAGCGCTAGTACTGATTCTGTTGTCCACTTGGGTACTCTGCATTGTGATGGAGAAGAGGAAGGAAGGCGCGAAGAGGAGAAAGTGGGCGATTTCGATGCCGGTCCCACAAGGGATGAACAGCGTGGTGGAGAAATCAGGGCCGTTCGCGTTCGAGACGGAATCGGGGTCAACGTGGGTGGCTGACCTGAAGGAACCGTCTTCGGCGGCGGTGGTGATGTTCGAGAAGCCGTTGATGAATCTGAGCTTCAAGGACCTCATTGTTGCCACGTCACACTTCGGGAAGGATTCCCTCCTGGCGGAGGGAAGGTGTGGGCCCGTTTACCGGGCCGTGCTGCCCGGGGACCTCCACGTGGCAATCAAGGTGCTGGAACACGCCAGAGACGTTGATCCTCATGACTCCGTCTCCACCTTCGTTGACCTCTCCAGGCTCAAGCACCCCAACTTGTTGCCCCTCTCCGGTTACTGCATTGCAGGTAAGGAGAAACTGGTACTGTACGAGTACATGGCAAACGGGGACTTGGGAAGGTGGCTACACGAGCTTCCAACTGGGGACACCAACGTGGAGGATTGGACAAGCGACACGTGGGAGATTCAAAACGGCGTGGTCGACGACGGATCCCCAGAAAAGATGGGGTGGTTAACACGGCACCGTATCGCGGTGGGAATAGCGCGTGGCCTCGCGTACCTTCACCACGCGCGTTCCAAGCCCGTGGTGCACGGCCACCTCGTTACCTCCAACATTCTACTTGCCGACGACTTTGAGCCACGGATTGCCGATTTCGGGTTGCGAGCCGACCCGAGTCCGAACGGCGGCACGGAGGATGACGTCTACTGCTTCGGGGCGGCGCTGATGGAGCTGCTGACCGGGAAggagagcagggcggaggcggtggcggcgacgaggaaggcggtgagggaggGGCGCGGTGAGAGGGTGCTGGACGAGAGGCTGCGAGTGGGTGGCGGTGAGTCGGTGGTGAGTGAGATGGTGGAGAGTCTCCGAGTGGCGTTCTTGTGTACGGCGGAGTCACCTTGGAAGAGGCCCAGCATGCAACAGGTGTTGGGTTTGCTCAAAGACATTCGTCCTCGTCAAGGACAACTCGTTCCGAGTTGA 1836 0.5272 MKPFCRFLILVSLFSLAESSCNNSEEHELVSKAFKSVSGFNASSRFQTNCSQTHITRIVLPSQNLSGTISWNYLRNMSRLQVLDLSQNSLEGHVPSWFWSSSNLSEINLSRNRFGGSIDINTSFSSIETLNLSHNRFTNSIQLSGLRNLKILDLSNNTFTGNFPSDFPPLNTLEYLNISFNNFTASTSLNELDRFKFNESSFIHAGNNFTFDNSTNPIHKKQERPKSKTVIVAASSPCASAALVLILLSTWVLCIVMEKRKEGAKRRKWAISMPVPQGMNSVVEKSGPFAFETESGSTWVADLKEPSSAAVVMFEKPLMNLSFKDLIVATSHFGKDSLLAEGRCGPVYRAVLPGDLHVAIKVLEHARDVDPHDSVSTFVDLSRLKHPNLLPLSGYCIAGKEKLVLYEYMANGDLGRWLHELPTGDTNVEDWTSDTWEIQNGVVDDGSPEKMGWLTRHRIAVGIARGLAYLHHARSKPVVHGHLVTSNILLADDFEPRIADFGLRADPSPNGGTEDDVYCFGAALMELLTGKESRAEAVAATRKAVREGRGERVLDERLRVGGGESVVSEMVESLRVAFLCTAESPWKRPSMQQVLGLLKDIRPRQGQLVPS 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01912 611 Pfam Leucine Rich Repeat 148 167 IPR001611 GO:0005515
Cca09g01912 611 ProSiteProfiles Protein kinase domain profile. 333 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01912 611 SUPERFAMILY Protein kinase-like (PK-like) 323 601 IPR011009 -
Cca09g01912 611 PRINTS Leucine-rich repeat signature 146 159 - -
Cca09g01912 611 PRINTS Leucine-rich repeat signature 80 93 - -
Cca09g01912 611 Gene3D Transferase(Phosphotransferase) domain 1 409 511 - -
Cca09g01912 611 ProSiteProfiles Leucine-rich repeat profile. 126 147 IPR001611 GO:0005515
Cca09g01912 611 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 157 - -
Cca09g01912 611 SUPERFAMILY L domain-like 49 193 - -
Cca09g01912 611 Gene3D Transferase(Phosphotransferase) domain 1 512 608 - -
Cca09g01912 611 Gene3D Phosphorylase Kinase; domain 1 293 408 - -
Cca09g01912 611 Pfam Protein tyrosine and serine/threonine kinase 337 506 IPR001245 GO:0004672|GO:0006468
Cca09g01912 611 Gene3D Ribonuclease Inhibitor 122 237 IPR032675 -
Cca09g01912 611 PANTHER KINASE, PUTATIVE-RELATED 3 157 - -
Cca09g01912 611 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 152 215 - -
Cca09g01912 611 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 219 605 - -
Cca09g01912 611 Gene3D Ribonuclease Inhibitor 17 121 IPR032675 -
Cca09g01912 611 PANTHER KINASE, PUTATIVE-RELATED 152 215 - -
Cca09g01912 611 PANTHER KINASE, PUTATIVE-RELATED 219 605 - -
Cca09g01912 611 Pfam Leucine rich repeat 54 114 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01912 Cca-Chr9 44016375 44019210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01912 53 601 Receptor kinase-like Gene Family AT5G07280 29.721 3.88e-65 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Cca09g01912 PK_Tyr_Ser-Thr 3.6e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01912 - - gmx:100788556 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01912 09 44016375 44019210 Cca09g01912 09 44016375 44019210 ECH
Cca09g01912 09 44016375 44019210 Cca08g02350 08 57404257 57407165 PCT